YRC Public Data Repository - Protein Structure Prediction

Protein:	EBGC_ECOLI
Organism:	Escherichia coli
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EBGC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|81246743, gi\|... - gi\|82545332\|ref\|YP_409279.1\| cryptic beta-D-galactosidase subunit beta [Shigella boydii Sb227], gi\|8... gi\|110616509, gi... - gi\|110806961\|ref\|YP_690481.1\| cryptic beta-D-galactosidase subunit beta [Shigella flexneri 5 str. 84...	173.0	[0..1]	[149..1]
gi\|30064421, gi\|... - gi\|30064421\|ref\|NP_838592.1\| cryptic beta-D-galactosidase subunit beta [Shigella flexneri 2a str. 24... gi\|24114373, gi\|... - gi\|24114373\|ref\|NP_708883.1\| cryptic beta-D-galactosidase subunit beta [Shigella flexneri 2a str. 30...	172.0	[0..1]	[149..1]
gi\|192959389, gi... - gi\|75239353\|ref\|ZP_00723324.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli E110019],...	171.0	[0..1]	[149..1]
gi\|189367590, gi... - gi\|189367590\|gb\|EDU86006.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|189358522, gi... - gi\|189358522\|gb\|EDU76941.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|188016385, gi... - gi\|188016385\|gb\|EDU54507.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|168785955, gi... - gi\|189374063\|gb\|EDU92479.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|13363432, gi\|... - gi\|15833213\|ref\|NP_311986.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli O157:H7 str... gi\|168781215, gi... - gi\|189001119\|gb\|EDU70105.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|187770795, gi... - gi\|187770795\|gb\|EDU34639.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|189361486, gi... - gi\|189361486\|gb\|EDU79905.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|13363432, gi\|... - gi\|15833213\|ref\|NP_311986.1\| evolved beta-D-galactosidase beta subunit [Escherichia coli O157:H7], g... gi\|209759150, gi... - pir\|\|F85968 evolved beta-D-galactosidase beta subunit [imported] - Escherichia coli (strain O157:H7,... gi\|12517661, gi\|... - gi\|15803618\|ref\|NP_289651.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli O157:H7 EDL... gi\|254594428, gi... - gi\|254795028\|ref\|YP_003079865.1\| cryptic beta-D-galactosidase, beta subunit [Escherichia coli O157:H... gi\|208814339, gi... - gi\|208814339\|ref\|ZP_03255668.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 s... gi\|208726113, gi... - gi\|208806312\|ref\|ZP_03248649.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 s... gi\|195937223 - gi\|195937223\|ref\|ZP_03082605.1\| cryptic beta-D-galactosidase subunit beta [Escherichia coli O157:H7 ... gi\|168797672, gi... - gi\|189379686\|gb\|EDU98102.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 str. ... gi\|217326970, gi... - gi\|217326970\|ref\|ZP_03443053.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 s... gi\|209162244, gi... - gi\|209400844\|ref\|YP_002272550.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 ... gi\|208819889, gi... - gi\|208819889\|ref\|ZP_03260209.1\| evolved beta-galactosidase, beta subunit [Escherichia coli O157:H7 s...	171.0	[0..1]	[149..1]
gi\|229839094, gi... - gi\|229839094\|ref\|ZP_04459253.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|115349074, gi... - gi\|218930463\|ref\|YP_002348338.1\| hypothetical protein YPO3447 [Yersinia pestis CO92], gi\|16123595\|re... gi\|229682348, gi... - gi\|229901009\|ref\|ZP_04516133.1\| conserved protein [Yersinia pestis Nepal516], gi\|229682348\|gb\|EEO784... gi\|165936679, gi... - gi\|89105075\|ref\|ZP_01177602.1\| COG2731: Beta-galactosidase, beta subunit [Yersinia pestis biovar Ori... gi\|108808940, gi... - gi\|108808940\|ref\|YP_652856.1\| hypothetical protein YPA_2949 [Yersinia pestis Antiqua], gi\|108780853\|... gi\|167399015, gi... - gi\|167399015\|ref\|ZP_02304539.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167420503, gi... - gi\|167420503\|ref\|ZP_02312256.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167423544, gi... - gi\|167423544\|ref\|ZP_02315297.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... Q66F15\|Q66F15_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|167469601 - gi\|167469601\|ref\|ZP_02334305.1\| hypothetical protein YpesF_17324 [Yersinia pestis FV-1] gi\|170025900, gi... - gi\|170025900\|ref\|YP_001722405.1\| hypothetical protein YPK_3685 [Yersinia pseudotuberculosis YPIII], ... gi\|186893887, gi... - gi\|186893887\|ref\|YP_001870999.1\| hypothetical protein YPTS_0556 [Yersinia pseudotuberculosis PB1/+],... gi\|153997511, gi... - gi\|153997511\|ref\|ZP_02022611.1\| hypothetical protein YPE_3967 [Yersinia pestis CA88-4125], gi\|149289... gi\|21957460, gi\|... - gi\|22124652\|ref\|NP_668075.1\| hypothetical protein y0739 [Yersinia pestis KIM], gi\|21957460\|gb\|AAM843... gi\|25302796 - pir\|\|AI0418 conserved hypothetical protein YPO3447 [imported] - Yersinia pestis (strain CO92) gi\|145212207, gi... - gi\|145600511\|ref\|YP_001164587.1\| hypothetical protein YPDSF_3257 [Yersinia pestis Pestoides F], gi\|1... gi\|165925731, gi... - gi\|165925731\|ref\|ZP_02221563.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|51594877, gi\|... - gi\|51594877\|ref\|YP_069068.1\| hypothetical protein YPTB0525 [Yersinia pseudotuberculosis IP 32953], g... gi\|77631520, gi\|... - gi\|77631520\|ref\|ZP_00794106.1\| COG2731: Beta-galactosidase, beta subunit [Yersinia pseudotuberculosi... gi\|166010182, gi... - gi\|166010182\|ref\|ZP_02231080.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229687149, gi... - gi\|229899657\|ref\|ZP_04514798.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|45435346, gi\|... - gi\|45440489\|ref\|NP_992028.1\| hypothetical protein YP_0637 [Yersinia pestis biovar Microtus str. 9100... gi\|166204503, gi... - gi\|166214271\|ref\|ZP_02240306.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229896582, gi... - gi\|229896582\|ref\|ZP_04511749.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700360\|gb\|EEO...	168.0	[0..2]	[142..1]
gi\|90441477, gi\|... - gi\|90578391\|ref\|ZP_01234202.1\| evolved beta-D-galactosidase, beta subunit [Vibrio angustum S14], gi\|...	167.0	[0..1]	[149..1]
gi\|116185256, gi... - gi\|75855901\|ref\|ZP_00763540.1\| COG2731: Beta-galactosidase, beta subunit [Vibrio sp. Ex25], gi\|11618...	167.0	[0..1]	[149..1]
gi\|238716951, gi... - gi\|77960169\|ref\|ZP_00824057.1\| COG2731: Beta-galactosidase, beta subunit [Yersinia mollaretii ATCC 4...	166.0	[0..2]	[139..1]
gi\|37680827, gi\|... - gi\|37680827\|ref\|NP_935436.1\| cryptic beta-D-galactosidase subunit beta [Vibrio vulnificus YJ016], gi...	165.0	[0..1]	[149..1]
Q668K0\|Q668K0_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|51590338, gi\|... - gi\|51597056\|ref\|YP_071247.1\| hypothetical protein YPTB2738 [Yersinia pseudotuberculosis IP 32953], g... gi\|77629785, gi\|... - gi\|77629785\|ref\|ZP_00792371.1\| COG2731: Beta-galactosidase, beta subunit [Yersinia pseudotuberculosi...	165.0	[0..2]	[139..1]

Back

Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIIDNLEQF RQIYASGKKW QRCVEAIENI DNIQPGVAHS IGDSLTYRVE TDSATDALFT  60
   61 GHRRYFEVHY YLQGQQKIEY APKETLQVVE YYRDETDREY LKGCGETVEV HEGQIVICDI 120
  121 HEAYRFICNN AVKKVVLKVT IEDGYFHNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.045757
Match:	1jopA
Description:	Hypothetical protein HI0227
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.391261742890951	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: