YRC Public Data Repository - Protein Structure Prediction

Protein:	DSDX_ECOLI
Organism:	Escherichia coli
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSDX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83363652, gi\|... - gi\|83375123\|ref\|ZP_00919887.1\| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...	212.0	[0..9]	[444..375]
gi\|25504467 - pir\|\|A95272 hypothetical protein SMa0151 [imported] - Sinorhizobium meliloti (strain 1021) magaplasm... gi\|16262534, gi\|... - gi\|16262534\|ref\|NP_435327.1\| hypothetical protein SMa0151 [Sinorhizobium meliloti 1021], gi\|14523143...	176.0	[0..58]	[444..1]
gi\|42548023, gi\|... - gi\|46116990\|ref\|XP_384513.1\| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi\|42548023\|gb\|E...	169.0	[0..10]	[407..515]
gi\|111063706, gi... - gi\|169608556\|ref\|XP_001797697.1\| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi\|11...	163.0	[0..10]	[445..500]
gi\|88865831, gi\|... - gi\|89056282\|ref\|YP_511733.1\| TRAP dicarboxylate transporter- DctM subunit [Jannaschia sp. CCS1], gi\|...	160.0	[0..5]	[445..159]
gi\|25320905 - pir\|\|G83983 C4-dicarboxylate transport system (permease large protein) BH2671 [imported] - Bacillus ... gi\|15615234, gi\|... - gi\|15615234\|ref\|NP_243537.1\| C4-dicarboxylate transport system (permease large protein) [Bacillus ha...	160.0	[0..12]	[445..3]
gi\|49076898, gi\|... - gi\|71021351\|ref\|XP_760906.1\| hypothetical protein UM04759.1 [Ustilago maydis 521], ref\|XP_402374.1\| ...	159.0	[0..10]	[445..579]
gi\|84387730, gi\|... - gi\|84387730\|ref\|ZP_00990746.1\| C4-dicarboxylate transport protein [Vibrio splendidus 12B01], gi\|8437... gi\|218323197, gi... - gi\|218710178\|ref\|YP_002417799.1\| DctQ, TRAP-type C4-dicarboxylate transport system, large permease c...	157.0	[0..10]	[443..1]
gi\|194554935, gi... - gi\|84323909\|ref\|ZP_00971975.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|115588537, gi... - gi\|32044546\|ref\|ZP_00141647.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	157.0	[0..12]	[445..3]
gi\|86147630, gi\|... - gi\|86147630\|ref\|ZP_01065939.1\| C4-dicarboxylate transport protein [Vibrio sp. MED222], gi\|85834541\|g...	157.0	[0..10]	[443..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSQIWVVST LLISIVLIVL TIVKFKFHPF LALLLASFFV GTMMGMGPLD MVNAIESGIG  60
   61 GTLGFLAAVI GLGTILGKMM EVSGAAERIG LTLQRCRWLS VDVIMVLVGL IC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GITLFVEVGV VLLIPLAFSI AKKTNTSLLK LAIPLCTALM AVHCVVPPHP AALYVANKLG  60
   61 ADIGSVIVYG LLVGLMASLI GGPLFLKFLG QRLPFKPVPT EFADLKVRDE KTLPSLGATL 120
  121 FTILLPIALM LVKTIAELNM ARE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [256-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGLYILVEFI GNPITAMFIA VFVAYYVLGI RQHMSMGTML THTENGFGSI ANILLIIGAG  60
   61 GAFNAILKSS SLADTLAVIL SNMHMHPILL AWLVALILHA AVGSATVAMM GATAIVAPML 120
  121 PLYPDISPEI IAIAIGSGAI GCTIVTDSLF WLVKQYCGAT LNETFKYYTT ATFIASVVAL 180
  181 AGTFLLSFII

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits