YRC Public Data Repository - Protein Structure Prediction

Protein:	DPPF_ECOLI
Organism:	Escherichia coli
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPPF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|89158826, gi\|... - gi\|89211579\|ref\|ZP_01189937.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	428.0	[0..6]	[327..2]
gi\|89100170, gi\|... - gi\|89100170\|ref\|ZP_01173038.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus sp. NRRL B...	427.0	[0..1]	[332..2]
gi\|23099907, gi\|... - gi\|23099907\|ref\|NP_693373.1\| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyen...	425.0	[0..6]	[331..2]
gi\|25297027 - pir\|\|E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodura... gi\|15616207, gi\|... - gi\|15616207\|ref\|NP_244512.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus halodurans C...	423.0	[0..8]	[327..1]
gi\|78044045, gi\|... - gi\|78044045\|ref\|YP_359973.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Carboxydot...	422.0	[0..8]	[332..1]
gi\|56963011, gi\|... - gi\|56963011\|ref\|YP_174738.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus clausii KSM-...	420.0	[0..8]	[333..2]
gi\|20808880, gi\|... - gi\|20808880\|ref\|NP_624051.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone... gi\|20808880 - gi\|20808880\|ref\|NP_624051.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone...	418.0	[0..8]	[326..1]
gi\|53798114 - ref\|ZP_00358722.1\| COG4608: ABC-type oligopeptide transport system, ATPase component [Chloroflexus a... gi\|76261100, gi\|... - gi\|76261100\|ref\|ZP_00768721.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin... gi\|222449561, gi... - gi\|222525682\|ref\|YP_002570153.1\| oligopeptide/dipeptide ABC transporter, ATPase subunit [Chloroflexu...	417.0	[0..1]	[328..1]

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Predicted Domain #1

Region A:
Residues: [1-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQEATLQQ PLLQAIDLKK HYPVKKGMFA PERLVKALDG VSFNLERGKT LAVVGESGCG  60
   61 KSTLGRLLTM IEMPTGGELY YQGQDLLKHD PQAQKLRRQK IQIVFQNPYG SLNPRKKVGQ 120
  121 ILEEPLLINT SLSKEQRREK ALSMMAKVGL KTEHYDRYPH MFSGGQRQRI AIARGLMLDP 180
  181 DVVIADEPVS ALDVSVRAQV LNLMMDLQQE LGLSYVFISH DLSVVEHIAD EVMVMYLGRC 240
  241 VEKGTKDQIF NNPRHPYTQA LLSATPRLNP DDRRERIKLS GELPSPLNPP PGCAFNARCR 300
  301 RRFGPCTQLQ PQLKDYGGQL VACFAVDQDE NPQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.0
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits