YRC Public Data Repository - Protein Structure Prediction

Protein:	DPIA_ECOLI
Organism:	Escherichia coli
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPIA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	232.0	[0..1]	[225..1]
gi\|186684336, gi... - gi\|53687799\|ref\|ZP_00108178.2\| COG0745: Response regulators consisting of a CheY-like receiver domai...	230.0	[0..6]	[226..20]
gi\|75703300, gi\|... - gi\|75909575\|ref\|YP_323871.1\| two component transcriptional regulator [Anabaena variabilis ATCC 29413...	229.0	[0..6]	[226..20]
gi\|25301056 - pir\|\|AG2368 two-component response regulator all4503 [imported] - Nostoc sp. (strain PCC 7120) gi\|17231995, gi\|... - gi\|17231995\|ref\|NP_488543.1\| two-component response regulator [Nostoc sp. PCC 7120], gi\|17133639\|dbj...	229.0	[0..6]	[226..23]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	229.0	[0..3]	[225..1]
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	228.0	[0..4]	[225..11]
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	228.0	[0..3]	[225..103]
gi\|48860348, gi\|... - gi\|67873291\|ref\|ZP_00503570.1\| Response regulator receiver:Transcriptional regulatory protein, C ter...	227.0	[0..1]	[225..1]
gi\|56910719, gi\|... - gi\|56964476\|ref\|YP_176207.1\| two-component response regulator of alkaline phosphatase synthesis [Bac...	227.0	[0..3]	[225..1]
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	227.0	[0..4]	[225..3]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAPLTLLIV EDETPLAEMH AEYIRHIPGF SQILLAGNLA QARMMIERFK PGLILLDNYL  60
   61 PDGRGINLLH ELVQAHYPGD VVFTTAASDM ETVSEAVRCG VFDYLIKPIA YERLGQTLTR 120
  121 FRQRKHMLES IDSASQKQID EMFNAYARGE PKDELPTGID PLTLNAVRKL FKEPGVQHTA 180
  181 ETVAQALTIS RTTARRYLEY CASRHLIIAE IVHGKVGRPQ RIYHSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.154902
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits