YRC Public Data Repository - Protein Structure Prediction

Protein:	DNAC_ECOLI
Organism:	Escherichia coli
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNAC_ECOLI.

Description	E-value	Query Range	Subject Range
DNAA_CLOPH - Chromosomal replication initiator protein DnaA OS=Clostridium phytofermentans (strain ATCC 700394 / ...	159.0	[0..5]	[243..55]
gi\|75761786, gi\|... - gi\|75761786\|ref\|ZP_00741721.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiensi...	154.0	[0..32]	[244..99]
gi\|81243760, gi\|... - gi\|82779612\|ref\|YP_405961.1\| DNA replication protein DnaC [Shigella dysenteriae Sd197], gi\|81243760\|... gi\|170518497, gi... - gi\|170680779\|ref\|YP_001746816.1\| DNA replication protein DnaC [Escherichia coli SMS-3-5], gi\|1705184...	154.0	[0..1]	[245..1]
DNAA_ALKMQ - Chromosomal replication initiator protein DnaA OS=Alkaliphilus metalliredigens (strain QYMF) GN=dnaA...	154.0	[0..65]	[244..112]
gi\|194469480, gi... - gi\|194469480\|ref\|ZP_03075464.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica se... gi\|194710425, gi... - gi\|194734923\|ref\|YP_002117461.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica s... gi\|194405185, gi... - gi\|194446522\|ref\|YP_002043786.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica s... gi\|194408029, gi... - gi\|194449725\|ref\|YP_002048566.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica s... gi\|205348950, gi... - gi\|205348950\|gb\|EDZ35581.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serova... gi\|195632626, gi... - gi\|195632626\|gb\|EDX51080.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serova... gi\|168234677, gi... - gi\|197291973\|gb\|EDY31323.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serova... gi\|205336960, gi... - gi\|205336960\|gb\|EDZ23724.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serova... gi\|205330341, gi... - gi\|205330341\|gb\|EDZ17105.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serova... gi\|168232902, gi... - gi\|205332909\|gb\|EDZ19673.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serova... gi\|161617853, gi... - gi\|161617853\|ref\|YP_001591818.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica s... gi\|167551204, gi... - gi\|205323854\|gb\|EDZ11693.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serova... gi\|56130577, gi\|... - gi\|56416320\|ref\|YP_153395.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serov... gi\|238910705 - gi\|238910705\|ref\|ZP_04654542.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica se... gi\|16423111, gi\|... - gi\|16767787\|ref\|NP_463402.1\| DNA replication protein DnaC [Salmonella typhimurium LT2], gi\|16423111\|... gi\|204926769, gi... - gi\|204926769\|ref\|ZP_03217971.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica se... gi\|197365243, gi... - gi\|197365243\|ref\|YP_002144880.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica s... gi\|200389226, gi... - gi\|200389226\|ref\|ZP_03215838.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica se... gi\|197211933, gi... - gi\|197248230\|ref\|YP_002149487.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica s... gi\|197263826, gi... - gi\|197263826\|ref\|ZP_03163900.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=dnaC] [protein=DNA replication protein DnaC] [protein_id=YP_005240885.1] [location=complement(...	153.0	[0..1]	[245..1]
gi\|62182965, gi\|... - gi\|62182965\|ref\|YP_219382.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serov... gi\|224586367, gi... - gi\|224586367\|ref\|YP_002640166.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica s...	153.0	[0..1]	[245..1]
gi\|241884523, gi... - gi\|241903120\|ref\|ZP_04787848.1\| chromosomal replication initiator protein DnaA [Thermoanaerobacter b... DNAA_THEP3 - Chromosomal replication initiator protein DnaA OS=Thermoanaerobacter pseudethanolicus (strain ATCC 3... gi\|242232045, gi... - gi\|242256452\|ref\|ZP_04801343.1\| chromosomal replication initiator protein DnaA [Thermoanaerobacter s... DNAA_THEPX - Chromosomal replication initiator protein DnaA OS=Thermoanaerobacter sp. (strain X514) GN=dnaA PE=3 ...	152.0	[0..23]	[243..66]
gi\|213421737 - gi\|213421737\|ref\|ZP_03354803.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica se... gi\|213163298 - gi\|213163298\|ref\|ZP_03349008.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica se... gi\|16505650, gi\|... - gi\|25299947\|pir\|\|AF1070 probable DNA replication protein [imported] - Salmonella enterica subsp. ent... gi\|16763341 - gi\|16763341\|ref\|NP_458958.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serov... gi\|29144819, gi\|... - gi\|29144819\|ref\|NP_808161.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica serov... gi\|213852399 - gi\|213852399\|ref\|ZP_03381931.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica se... gi\|213580512 - gi\|213580512\|ref\|ZP_03362338.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica se... gi\|213428398 - gi\|213428398\|ref\|ZP_03361148.1\| DNA replication protein DnaC [Salmonella enterica subsp. enterica se...	152.0	[0..1]	[245..1]
DNAA_CLOB8 - Chromosomal replication initiator protein DnaA OS=Clostridium beijerinckii (strain ATCC 51743 / NCIM...	152.0	[0..38]	[243..78]
gi\|229181735, gi... - gi\|229181735\|ref\|ZP_04309058.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus 1725... DNAA_BACC4 - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain B4264) GN=dnaA PE=3 SV=1 gi\|206970479, gi... - gi\|206970479\|ref\|ZP_03231432.1\| chromosomal replication initiator protein DnaA [Bacillus cereus AH11... DNAA_BACCR - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM ... gi\|228835452, gi... - gi\|228924234\|ref\|ZP_04087505.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|229051158, gi... - gi\|229051158\|ref\|ZP_04194702.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus AH67... gi\|229072954, gi... - gi\|229072954\|ref\|ZP_04206150.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus F651... gi\|228955739, gi... - gi\|228955739\|ref\|ZP_04117734.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|228797947, gi... - gi\|228961753\|ref\|ZP_04123356.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|228635464, gi... - gi\|229148039\|ref\|ZP_04276378.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD... gi\|228629834, gi... - gi\|229153648\|ref\|ZP_04281824.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus m155... gi\|229112902, gi... - gi\|229112902\|ref\|ZP_04242433.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock... gi\|229130735, gi... - gi\|229130735\|ref\|ZP_04259688.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD...	151.0	[0..52]	[244..98]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNVGDLMQR LQKMMPAHIK PAFKTGEELL AWQKEQGAIR SAALERENRA MKMQRTFNRS  60
   61 GIRPLHQNCS FENYRVECEG QMNALSKARQ YVEEFDGNIA SFIFSGKPGT GKNHLAAAIC 120
  121 NELLLRGKSV LIITVADIMS AMKDTFRNSG TSEEQLLNDL SNVDLLVIDE IGVQTESKYE 180
  181 KVIINQIVDR RSSSKRPTGM LTNSNMEEMT KLLGERVMDR MRLGNSLWVI FNWDSYRSRV 240
  241 TGKEY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: