YRC Public Data Repository - Protein Structure Prediction

Protein:	DMA_ECOLI
Organism:	Escherichia coli
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DMA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|56415400, gi\|... - gi\|56415400\|ref\|YP_152475.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Para... gi\|197364330, gi... - gi\|197364330\|ref\|YP_002143967.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ...	321.0	[0..1]	[278..1]
gi\|110807219, gi... - gi\|110807219\|ref\|YP_690739.1\| DNA adenine methylase [Shigella flexneri 5 str. 8401], gi\|110616767\|gb... gi\|24053854, gi\|... - gi\|24114650\|ref\|NP_709160.1\| DNA adenine methylase [Shigella flexneri 2a str. 301], gi\|24053854\|gb\|A... gi\|30065329, gi\|... - gi\|30065329\|ref\|NP_839500.1\| DNA adenine methylase [Shigella flexneri 2a str. 2457T], gi\|30043591\|gb...	320.0	[0..1]	[278..1]
gi\|168241621, gi... - gi\|205338780\|gb\|EDZ25544.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Heide... gi\|168260799, gi... - gi\|205350185\|gb\|EDZ36816.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Hadar... gi\|195632094, gi... - gi\|195632094\|gb\|EDX50578.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Newpo... gi\|205344648, gi... - gi\|205344648\|gb\|EDZ31412.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Welte... gi\|167549316, gi... - gi\|205325792\|gb\|EDZ13631.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Saint... gi\|167994589, gi... - gi\|205327583\|gb\|EDZ14347.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|205333151, gi... - gi\|205333151\|gb\|EDZ19915.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Kentu... gi\|168235074, gi... - gi\|197291528\|gb\|EDY30880.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Schwa... gi\|161365884, gi... - gi\|161616520\|ref\|YP_001590485.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|213417852 - gi\|213417852\|ref\|ZP_03350954.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|213426746 - gi\|213426746\|ref\|ZP_03359496.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|213648703 - gi\|213648703\|ref\|ZP_03378756.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|214000220 - gi\|214000220\|ref\|ZP_03410955.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|238913607 - gi\|238913607\|ref\|ZP_04657444.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|204928559, gi... - gi\|204928559\|ref\|ZP_03219758.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar J... gi\|205354892, gi... - gi\|205354892\|ref\|YP_002228693.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|206710527, gi... - gi\|207858724\|ref\|YP_002245375.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|213053387 - gi\|213053387\|ref\|ZP_03346265.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|197248723, gi... - gi\|197248723\|ref\|YP_002148405.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|197264780, gi... - gi\|197264780\|ref\|ZP_03164854.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar S... gi\|197937559, gi... - gi\|198243043\|ref\|YP_002217445.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|200387646, gi... - gi\|200387646\|ref\|ZP_03214258.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar V... gi\|194442408, gi... - gi\|194442408\|ref\|YP_002042734.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|194448269, gi... - gi\|194448269\|ref\|YP_002047508.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|194455380, gi... - gi\|194469016\|ref\|ZP_03075000.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar K... gi\|194710366, gi... - gi\|194734864\|ref\|YP_002116427.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... DMA_SALTY - DNA adenine methylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dam PE=3 SV... gi\|62129619, gi\|... - gi\|62181986\|ref\|YP_218403.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Chol... gi\|29144290, gi\|... - gi\|29144290\|ref\|NP_807632.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Typh... DMA_SALTI - DNA adenine methylase OS=Salmonella typhi GN=dam PE=3 SV=1 DMA_SALTI - DNA adenine methylase OS=Salmonella typhi GN=dam PE=3 SV=1 gi\|16762803 - gi\|16762803\|ref\|NP_458420.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Typh... DMA_SALTY - DNA adenine methylase OS=Salmonella typhimurium GN=dam PE=3 SV=1 gi\|224469806, gi... - gi\|224585278\|ref\|YP_002639077.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... DMA_SALTY - DNA adenine methylase OS=Salmonella typhimurium GN=dam PE=3 SV=1 lcl\|NC_016856.1_... - [gene=dam] [protein=DNA adenine methylase] [protein_id=YP_005239682.1] [location=complement(3652585....	319.0	[0..1]	[278..1]
gi\|227883517, gi... - gi\|227883517\|ref\|ZP_04001322.1\| site-specific DNA-methyltransferase (adenine-specific) [Escherichia ... gi\|237703114, gi... - gi\|237703114\|ref\|ZP_04533595.1\| DNA adenine methylase [Escherichia sp. 3_2_53FAA], gi\|226902378\|gb\|E... gi\|75516145, gi\|... - gi\|75516145\|ref\|ZP_00738263.1\| COG0338: Site-specific DNA methylase [Escherichia coli 53638], gi\|188... gi\|254038551, gi... - gi\|254038551\|ref\|ZP_04872607.1\| DNA adenine methylase [Escherichia sp. 1_1_43], gi\|226839057\|gb\|EEH7... gi\|75241523, gi\|... - gi\|75241523\|ref\|ZP_00725368.1\| COG0338: Site-specific DNA methylase [Escherichia coli F11], gi\|19117... gi\|26249981, gi\|... - gi\|26249981\|ref\|NP_756021.1\| DNA adenine methylase [Escherichia coli CFT073], gi\|26110410\|gb\|AAN8259... gi\|117625655, gi... - gi\|117625655\|ref\|YP_858978.1\| DNA adenine methylase [Escherichia coli APEC O1], gi\|115514779\|gb\|ABJ0... gi\|91212859, gi\|... - gi\|91212859\|ref\|YP_542845.1\| DNA adenine methylase [Escherichia coli UTI89], gi\|91074433\|gb\|ABE09314... gi\|110345213, gi... - gi\|110643621\|ref\|YP_671351.1\| DNA adenine methylase [Escherichia coli 536], gi\|110345213\|gb\|ABG71450... gi\|170683954, gi... - gi\|170683954\|ref\|YP_001745630.1\| DNA adenine methylase [Escherichia coli SMS-3-5], gi\|170521672\|gb\|A... gi\|218367213, gi... - gi\|218560444\|ref\|YP_002393357.1\| DNA adenine methylase [Escherichia coli S88], gi\|218367213\|emb\|CAR0... gi\|215266740, gi... - gi\|215488668\|ref\|YP_002331099.1\| DNA adenine methylase [Escherichia coli O127:H6 str. E2348/69], gi\|... gi\|218702130, gi... - gi\|218702130\|ref\|YP_002409759.1\| DNA adenine methylase [Escherichia coli IAI39], gi\|218372116\|emb\|CA... gi\|218691663, gi... - gi\|218691663\|ref\|YP_002399875.1\| DNA adenine methylase [Escherichia coli ED1a], gi\|218429227\|emb\|CAR...	319.0	[0..1]	[278..1]
gi\|73857369, gi\|... - gi\|74313892\|ref\|YP_312311.1\| DNA adenine methylase [Shigella sonnei Ss046], gi\|73857369\|gb\|AAZ90076.... gi\|194434647, gi... - gi\|194434647\|ref\|ZP_03066902.1\| DNA adenine methylase [Shigella dysenteriae 1012], gi\|194417106\|gb\|E...	318.0	[0..1]	[278..1]
gi\|82778798, gi\|... - gi\|82778798\|ref\|YP_405147.1\| DNA adenine methylase [Shigella dysenteriae Sd197], gi\|81242946\|gb\|ABB6...	318.0	[0..1]	[278..1]
gi\|1675388 - gi\|1675388\|gb\|AAB19116.1\| adenine methylase [Salmonella typhimurium] DMA_SALTM - DNA adenine methylase OS=Salmonella typhimurium GN=dam PE=1 SV=1	316.0	[0..1]	[278..1]
gi\|54307504, gi\|... - gi\|54307504\|ref\|YP_128524.1\| putative DNA adenine methylase [Photobacterium profundum SS9], gi\|46911...	310.0	[0..1]	[275..1]
gi\|90413591, gi\|... - gi\|90413591\|ref\|ZP_01221581.1\| putative DNA adenine methylase [Photobacterium profundum 3TCK], gi\|90...	307.0	[0..1]	[275..1]
gi\|84390815, gi\|... - gi\|84390815\|ref\|ZP_00991507.1\| site-specific DNA methylase [Vibrio splendidus 12B01], gi\|84376618\|gb...	305.0	[0..1]	[276..1]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNRAFLKW AGGKYPLLDD IKRHLPKGEC LVEPFVGAGS VFLNTDFSRY ILADINSDLI  60
   61 SLYNIVKMRT DEYVQAAREL FVPETNCAEV YYQFREEFNK SQDPFRRAVL FLYLNRYGYN 120
  121 GLCRYNLRGE FNVPFGRYKK PYFPEAELYH FAEKAQNAFF YCESYADSMA RADDASVVYC 180
  181 DPPYAPLSAT ANFTAYHTNS FTLEQQAHLA EIAEGLVERH IPVLISNHDT MLTREWYQRA 240
  241 KLHVVKVRRS ISSNGGTRKK VDELLALYKP GVVSPAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.69897
Match:	2oreD
Description:	No description for 2oreD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits