YRC Public Data Repository - Protein Structure Prediction

Protein:	DIV_ECOLI
Organism:	Escherichia coli
Length:	331 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DIV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|197093142, gi... - gi\|197361666\|ref\|YP_002141302.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enteric... gi\|197265147, gi... - gi\|197265147\|ref\|ZP_03165221.1\| protein div [Salmonella enterica subsp. enterica serovar Saintpaul s... gi\|194711919, gi... - gi\|194736417\|ref\|YP_002115442.1\| protein div [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|194468623, gi... - gi\|194468623\|ref\|ZP_03074607.1\| protein div [Salmonella enterica subsp. enterica serovar Kentucky st... gi\|214002043 - gi\|214002043\|ref\|ZP_03412778.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica... gi\|213648271 - gi\|213648271\|ref\|ZP_03378324.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica... gi\|213580270 - gi\|213580270\|ref\|ZP_03362096.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica... gi\|213426974 - gi\|213426974\|ref\|ZP_03359724.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica... FLK_SALTY - Flagellar regulator flk OS=Salmonella typhimurium GN=flk PE=1 SV=1 gi\|16761296 - gi\|16761296\|ref\|NP_456913.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=flk] [protein=flagella biosynthesis regulator] [protein_id=YP_005238454.1] [location=2535147..... gi\|205338610, gi... - gi\|205338610\|gb\|EDZ25374.1\| protein div [Salmonella enterica subsp. enterica serovar Heidelberg str.... gi\|197289668, gi... - gi\|197289668\|gb\|EDY29031.1\| protein div [Salmonella enterica subsp. enterica serovar Schwarzengrund ... gi\|168229747, gi... - gi\|205335767\|gb\|EDZ22531.1\| protein div [Salmonella enterica subsp. enterica serovar Kentucky str. C... gi\|205328820, gi... - gi\|205328820\|gb\|EDZ15584.1\| protein div [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- st... gi\|194406160, gi... - gi\|194447856\|ref\|YP_002046427.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enteric... gi\|194443243, gi... - gi\|194443243\|ref\|YP_002041635.1\| protein div [Salmonella enterica subsp. enterica serovar Newport st... gi\|56412732, gi\|... - gi\|56412732\|ref\|YP_149807.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica se... gi\|168817891, gi... - gi\|205344870\|gb\|EDZ31634.1\| protein div [Salmonella enterica subsp. enterica serovar Weltevreden str... gi\|238912350 - gi\|238912350\|ref\|ZP_04656187.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica... gi\|168465917, gi... - gi\|195631434\|gb\|EDX49994.1\| protein div [Salmonella enterica subsp. enterica serovar Newport str. SL... FLK_SALTY - Flagellar regulator flk OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=flk PE=1 ... gi\|167549622, gi... - gi\|205325369\|gb\|EDZ13208.1\| protein div [Salmonella enterica subsp. enterica serovar Saintpaul str. ... gi\|29141008, gi\|... - gi\|29141008\|ref\|NP_804350.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica se... gi\|161362257, gi... - gi\|161612893\|ref\|YP_001586858.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enteric... FLK_SALTY - Flagellar regulator flk OS=Salmonella typhimurium GN=flk PE=1 SV=1 gi\|16503595, gi\|... - gi\|25358837\|pir\|\|AI0802 Div protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (...	436.0	[0..2]	[330..1]
gi\|238791921, gi... - gi\|77979069\|ref\|ZP_00834490.1\| hypothetical protein YintA_01001037 [Yersinia intermedia ATCC 29909],...	421.0	[0..2]	[327..1]
gi\|75196364, gi\|... - gi\|75196364\|ref\|ZP_00706434.1\| hypothetical protein EcolH_01002172 [Escherichia coli HS], gi\|1571618... gi\|218352652, gi... - gi\|218695920\|ref\|YP_002403587.1\| flagella biosynthesis regulator [Escherichia coli 55989], gi\|218352...	420.0	[0..1]	[331..1]
gi\|218554876, gi... - gi\|218554876\|ref\|YP_002387789.1\| flagella biosynthesis regulator [Escherichia coli IAI1], gi\|2183616... gi\|195183112 - gi\|195183112\|dbj\|BAG66672.1\| predicted flagella assembly protein [Escherichia coli O111:H-] gi\|82544802, gi\|... - gi\|82544802\|ref\|YP_408749.1\| flagella biosynthesis regulator [Shigella boydii Sb227], gi\|81246213\|gb... gi\|209919821, gi... - gi\|209919821\|ref\|YP_002293905.1\| flagella biosynthesis regulator [Escherichia coli SE11], gi\|2099130... gi\|194432943, gi... - gi\|83570069\|ref\|ZP_00921516.1\| hypothetical protein Sdys1_01001660 [Shigella dysenteriae 1012], gi\|1... gi\|75235527, gi\|... - gi\|75235527\|ref\|ZP_00719718.1\| hypothetical protein EcolE1_01002706 [Escherichia coli E110019], gi\|1... gi\|192931916, gi... - gi\|75259780\|ref\|ZP_00731082.1\| hypothetical protein EcolE2_01000697 [Escherichia coli E22], gi\|19306... gi\|194428602, gi... - gi\|75210135\|ref\|ZP_00710307.1\| hypothetical protein EcolB_01002690 [Escherichia coli B171], gi\|19442... gi\|75231413, gi\|... - gi\|75231413\|ref\|ZP_00717801.1\| hypothetical protein EcolB7_01000567 [Escherichia coli B7A], gi\|19116...	420.0	[0..1]	[331..1]
gi\|74312838, gi\|... - gi\|74312838\|ref\|YP_311257.1\| flagella biosynthesis regulator [Shigella sonnei Ss046], gi\|73856315\|gb...	418.0	[0..1]	[331..1]
gi\|110344117, gi... - gi\|110642525\|ref\|YP_670255.1\| flagella biosynthesis regulator [Escherichia coli 536], gi\|110344117\|g... gi\|191169918, gi... - gi\|75243132\|ref\|ZP_00726838.1\| hypothetical protein EcolF_01000355 [Escherichia coli F11], gi\|191169... gi\|218690481, gi... - gi\|218690481\|ref\|YP_002398693.1\| flagella biosynthesis regulator [Escherichia coli ED1a], gi\|2184280...	418.0	[0..1]	[331..1]
gi\|75177890, gi\|... - gi\|75177890\|ref\|ZP_00697952.1\| hypothetical protein SboyB_01002095 [Shigella boydii BS512], gi\|18773...	418.0	[0..1]	[331..1]
gi\|24052762, gi\|... - gi\|24113693\|ref\|NP_708203.1\| flagella biosynthesis regulator [Shigella flexneri 2a str. 301], gi\|240... gi\|30042002, gi\|... - gi\|30063747\|ref\|NP_837918.1\| flagella biosynthesis regulator [Shigella flexneri 2a str. 2457T], gi\|3...	418.0	[0..1]	[331..1]
gi\|218370783, gi... - gi\|218700797\|ref\|YP_002408426.1\| flagella biosynthesis regulator [Escherichia coli IAI39], gi\|218370... gi\|26248710, gi\|... - gi\|26248710\|ref\|NP_754750.1\| flagella biosynthesis regulator [Escherichia coli CFT073], gi\|26109115\|...	418.0	[0..1]	[331..1]
gi\|189372894, gi... - gi\|189372894\|gb\|EDU91310.1\| div protein [Escherichia coli O157:H7 str. EC869], gi\|168787234\|ref\|ZP_0... gi\|168761235, gi... - gi\|189368301\|gb\|EDU86717.1\| div protein [Escherichia coli O157:H7 str. EC4501], gi\|168761235\|ref\|ZP_... gi\|209764762, gi... - pir\|\|F85873 cell division protein [imported] - Escherichia coli (strain O157:H7, substrain EDL933),... gi\|12516683, gi\|... - gi\|15802868\|ref\|NP_288895.1\| flagella biosynthesis regulator [Escherichia coli O157:H7 EDL933], gi\|1... gi\|13362675, gi\|... - gi\|15832459\|ref\|NP_311232.1\| cell division protein [Escherichia coli O157:H7], gi\|13362675\|dbj\|BAB36... gi\|13362675, gi\|... - gi\|15832459\|ref\|NP_311232.1\| flagella biosynthesis regulator [Escherichia coli O157:H7 str. Sakai], ... gi\|217319313, gi... - gi\|217326946\|ref\|ZP_03443029.1\| div protein [Escherichia coli O157:H7 str. TW14588], gi\|217319313\|gb... gi\|168798497, gi... - gi\|189378946\|gb\|EDU97362.1\| div protein [Escherichia coli O157:H7 str. EC508], gi\|168798497\|ref\|ZP_0...	416.0	[0..1]	[331..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQPISGPPP GQPPGQGDNL PSGTGNQPLS SQQRTSLESL MTKVTSLTQQ QRAELWAGIR  60
   61 HDIGLSGDSP LLSRHFPAAE HNLAQRLLAA QKSHSARQLL AQLGEYLRLG NNRQAVTDYI 120
  121 RHNFGQTPLN QLSPEQLKTI LTLLQEGK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [149-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIPQPQQRE ATDRPLLPAE HNALKQLVTK LAAATGEPSK QIWQSMLELS GVKDGELIPA  60
   61 KLFNHLVTWL QARQTLSQQN TPTLESLQMT LKQPLDASEL AALSAYIQQK YGLSAQSSLS 120
  121 SAQAEDILNQ LYQRRVKGID PRVMQPLLNP FPPMMDTLQN MATRPALWIL LVAIILMLVW 180
  181 LVR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits