YRC Public Data Repository - Protein Structure Prediction

Protein:	DGOK_ECOLI
Organism:	Escherichia coli
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DGOK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75197592, gi\|... - gi\|75197592\|ref\|ZP_00707662.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli HS], gi\|157...	366.0	[0..1]	[292..1]
gi\|74314008, gi\|... - gi\|74314008\|ref\|YP_312427.1\| 2-oxo-3-deoxygalactonate kinase [Shigella sonnei Ss046], gi\|73857485\|gb...	365.0	[0..1]	[292..1]
gi\|193063769, gi... - gi\|75258234\|ref\|ZP_00729682.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli E22], gi\|19... gi\|75236418, gi\|... - gi\|75236418\|ref\|ZP_00720514.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli E110019], g... gi\|157158999, gi... - gi\|75188451\|ref\|ZP_00701718.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli E24377A], g...	364.0	[0..1]	[292..1]
gi\|218697416, gi... - gi\|218697416\|ref\|YP_002405083.1\| 2-oxo-3-deoxygalactonate kinase [Escherichia coli 55989], gi\|218354... gi\|75231036, gi\|... - gi\|75231036\|ref\|ZP_00717471.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli B7A], gi\|19... gi\|218363028, gi... - gi\|218556259\|ref\|YP_002389173.1\| 2-oxo-3-deoxygalactonate kinase [Escherichia coli IAI1], gi\|2183630...	363.0	[0..1]	[292..1]
gi\|194425363, gi... - gi\|83588440\|ref\|ZP_00927064.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli 101-1], gi\|...	362.0	[0..1]	[292..1]
gi\|110617163, gi... - gi\|110807615\|ref\|YP_691135.1\| 2-oxo-3-deoxygalactonate kinase [Shigella flexneri 5 str. 8401], gi\|11... gi\|24054249, gi\|... - gi\|24114996\|ref\|NP_709506.1\| 2-oxo-3-deoxygalactonate kinase [Shigella flexneri 2a str. 301], gi\|240... gi\|30065002, gi\|... - gi\|30065002\|ref\|NP_839173.1\| 2-oxo-3-deoxygalactonate kinase [Shigella flexneri 2a str. 2457T], gi\|3...	362.0	[0..1]	[292..1]
gi\|110644037, gi... - gi\|110644037\|ref\|YP_671767.1\| 2-dehydro-3-deoxygalactonokinase [Escherichia coli 536], gi\|110345629\|... gi\|75242516, gi\|... - gi\|75242516\|ref\|ZP_00726260.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli F11], gi\|19...	360.0	[0..1]	[292..1]
gi\|26250434, gi\|... - gi\|26250434\|ref\|NP_756474.1\| 2-dehydro-3-deoxygalactonokinase [Escherichia coli CFT073], gi\|26110864...	360.0	[0..1]	[292..1]
gi\|83571493, gi\|... - gi\|83571493\|ref\|ZP_00922933.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Shigella dysenteriae 1012], ...	360.0	[0..1]	[292..1]
gi\|218367538, gi... - gi\|218560769\|ref\|YP_002393682.1\| 2-oxo-3-deoxygalactonate kinase [Escherichia coli S88], gi\|21836753... gi\|237703494, gi... - gi\|237703494\|ref\|ZP_04533975.1\| 2-oxo-3-deoxygalactonate kinase DgoK [Escherichia sp. 3_2_53FAA], gi... gi\|91074791, gi\|... - gi\|91213217\|ref\|YP_543203.1\| 2-dehydro-3-deoxygalactonokinase [Escherichia coli UTI89], gi\|91074791\|... gi\|117625970, gi... - gi\|117625970\|ref\|YP_859293.1\| 2-oxo-3-deoxygalactonate kinase DgoK [Escherichia coli APEC O1], gi\|11...	360.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARYIAIDW GSTNLRAWLY QGDHCLESRQ SEAGVTRLNG KSPAAVLAEV TTDWREEKTP  60
   61 VVMAGMVGSN VGWKVAPYLS VPACFSSIGE QLTSVGDNIW IIPGLCVSHD DNHNVMRGEE 120
  121 TQLIGARALA PSSLYVMPGT HCKWVQADSQ QINDFRTVMT GELHHLLLNH SLIGAGLPPQ 180
  181 ENSADAFTAG LERGLNTPAI LPQLFEVRAS HVLGTLPREQ VSEFLSGLLI GAEVASMRDY 240
  241 VAHQHAITLV AGTSLTARYQ QAFQAMGCDV TAVAGDTAFQ AGIRSIAHAV AN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	2gtdA
Description:	No description for 2gtdA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.678979500792059	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: