YRC Public Data Repository - Protein Structure Prediction

Protein:	DEDA_ECOLI
Organism:	Escherichia coli
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEDA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238791911, gi... - gi\|77976968\|ref\|ZP_00832431.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia interm...	173.0	[0..1]	[218..1]
gi\|67547666, gi\|... - gi\|67547666\|ref\|ZP_00425567.1\| DedA [Burkholderia vietnamiensis G4], gi\|67531101\|gb\|EAM27925.1\| DedA...	173.0	[0..1]	[218..753]
gi\|238718698, gi... - gi\|77960847\|ref\|ZP_00824702.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia mollar...	171.0	[0..1]	[218..1]
gi\|77957381, gi\|... - gi\|77957381\|ref\|ZP_00821439.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia bercov...	170.0	[0..1]	[218..1]
gi\|238788687, gi... - gi\|77975510\|ref\|ZP_00831045.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia freder...	169.0	[0..1]	[218..1]
gi\|68202954, gi\|... - gi\|68229389\|ref\|ZP_00568584.1\| DedA [Frankia sp. EAN1pec], gi\|68202954\|gb\|EAN17131.1\| DedA [Frankia ...	168.0	[0..23]	[215..19]
gi\|197248570, gi... - gi\|197248570\|ref\|YP_002147328.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica ... gi\|197241308, gi... - gi\|197263053\|ref\|ZP_03163127.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica s... gi\|197361670, gi... - gi\|197361670\|ref\|YP_002141306.1\| hypothetical protein SSPA0461 [Salmonella enterica subsp. enterica ... gi\|197940369, gi... - gi\|198245853\|ref\|YP_002216440.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica ... gi\|168465921, gi... - gi\|195631132\|gb\|EDX49692.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|205344935, gi... - gi\|205344935\|gb\|EDZ31699.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|194444175, gi... - gi\|194444175\|ref\|YP_002041631.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica ... gi\|194468752, gi... - gi\|194468752\|ref\|ZP_03074736.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica s... gi\|205325277, gi... - gi\|205325277\|gb\|EDZ13116.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|205328845, gi... - gi\|205328845\|gb\|EDZ15609.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|205335626, gi... - gi\|205335626\|gb\|EDZ22390.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|205349458, gi... - gi\|205349458\|gb\|EDZ36089.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|161612897, gi... - gi\|161612897\|ref\|YP_001586862.1\| hypothetical protein SPAB_00603 [Salmonella enterica subsp. enteric... gi\|213852688 - gi\|213852688\|ref\|ZP_03382220.1\| hypothetical protein SentesT_07396 [Salmonella enterica subsp. enter... gi\|214002039 - gi\|214002039\|ref\|ZP_03412774.1\| hypothetical protein Salmonellentericaenterica_17187 [Salmonella ent... gi\|224467670, gi... - gi\|224583143\|ref\|YP_002636941.1\| DedA protein (dsg-1 protein) [Salmonella enterica subsp. enterica s... gi\|238912354 - gi\|238912354\|ref\|ZP_04656191.1\| hypothetical protein SentesTe_14641 [Salmonella enterica subsp. ente... gi\|213426978 - gi\|213426978\|ref\|ZP_03359728.1\| hypothetical protein SentesTyphi_16005 [Salmonella enterica subsp. e... gi\|213582887 - gi\|213582887\|ref\|ZP_03364713.1\| hypothetical protein SentesTyph_17428 [Salmonella enterica subsp. en... gi\|213622845 - gi\|213622845\|ref\|ZP_03375628.1\| hypothetical protein SentesTyp_37222 [Salmonella enterica subsp. ent... gi\|213646799 - gi\|213646799\|ref\|ZP_03376852.1\| hypothetical protein SentesTy_05485 [Salmonella enterica subsp. ente... gi\|199606375, gi... - gi\|200389277\|ref\|ZP_03215889.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica s... gi\|204929140, gi... - gi\|204929140\|ref\|ZP_03220283.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica s... gi\|62180939, gi\|... - gi\|62180939\|ref\|YP_217356.1\| hypothetical protein SC2369 [Salmonella enterica subsp. enterica serova... gi\|205273261, gi... - gi\|205353480\|ref\|YP_002227281.1\| hypothetical protein SG2397 [Salmonella enterica subsp. enterica se... gi\|56126993, gi\|... - gi\|56412736\|ref\|YP_149811.1\| hypothetical protein SPA0497 [Salmonella enterica subsp. enterica serov... gi\|207857785, gi... - gi\|207857785\|ref\|YP_002244436.1\| hypothetical protein SEN2349 [Salmonella enterica subsp. enterica s... lcl\|NC_016856.1_... - [gene=dedA] [protein=hypothetical protein] [protein_id=YP_005238450.1] [location=complement(2531306.... gi\|29136637, gi\|... - gi\|29141012\|ref\|NP_804354.1\| hypothetical protein t0497 [Salmonella enterica subsp. enterica serovar... gi\|16761292 - gi\|16761292\|ref\|NP_456909.1\| hypothetical protein STY2598 [Salmonella enterica subsp. enterica serov... gi\|16503591, gi\|... - gi\|25299139\|pir\|\|AE0802 DedA protein (dsg-1 protein) [imported] - Salmonella enterica subsp. enteric... gi\|16420910, gi\|... - gi\|16765694\|ref\|NP_461309.1\| hypothetical protein STM2367 [Salmonella typhimurium LT2], gi\|16420910\|...	167.0	[0..1]	[219..1]
gi\|37527058, gi\|... - gi\|37527058\|ref\|NP_930402.1\| hypothetical protein plu3172 [Photorhabdus luminescens subsp. laumondii...	166.0	[0..2]	[218..13]
gi\|25299138 - pir\|\|AG0337 probable membrane protein dedA [imported] - Yersinia pestis (strain CO92) gi\|51590218, gi\|... - gi\|51596936\|ref\|YP_071127.1\| hypothetical protein YPTB2617 [Yersinia pseudotuberculosis IP 32953], g... gi\|45442186, gi\|... - gi\|45442186\|ref\|NP_993725.1\| hypothetical protein YP_2397 [Yersinia pestis biovar Microtus str. 9100... gi\|218929839, gi... - gi\|218929839\|ref\|YP_002347714.1\| hypothetical protein YPO2767 [Yersinia pestis CO92], gi\|16122971\|re... gi\|162353253, gi... - gi\|77635313\|ref\|ZP_00797399.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia pestis... gi\|152959548, gi... - gi\|77629665\|ref\|ZP_00792251.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia pseudo... Q668X0\|Q668X0_YERPS - Putative membrane protein - Yersinia pseudotuberculosis gi\|229688451, gi... - gi\|229898903\|ref\|ZP_04514048.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|229701675, gi... - gi\|229895367\|ref\|ZP_04510540.1\| conserved inner membrane protein [Yersinia pestis Pestoides A], gi\|2... gi\|145210968, gi... - gi\|145599272\|ref\|YP_001163348.1\| hypothetical protein YPDSF_1994 [Yersinia pestis Pestoides F], gi\|1... gi\|229838337, gi... - gi\|229838337\|ref\|ZP_04458496.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|89103385, gi\|... - gi\|89103385\|ref\|ZP_01175965.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia pestis... gi\|149365241, gi... - gi\|149365241\|ref\|ZP_01887276.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149291654\|... gi\|108779985, gi... - gi\|108808072\|ref\|YP_651988.1\| hypothetical protein YPA_2077 [Yersinia pestis Antiqua], gi\|108779985\|... gi\|229680144, gi... - gi\|229902697\|ref\|ZP_04517814.1\| conserved inner membrane protein [Yersinia pestis Nepal516], gi\|2296... gi\|167469281 - gi\|167469281\|ref\|ZP_02333985.1\| DedA protein [Yersinia pestis FV-1] gi\|169750305, gi... - gi\|170023771\|ref\|YP_001720276.1\| hypothetical protein YPK_1530 [Yersinia pseudotuberculosis YPIII], ... gi\|186699043, gi... - gi\|186896017\|ref\|YP_001873129.1\| hypothetical protein YPTS_2712 [Yersinia pseudotuberculosis PB1/+],... gi\|165923000, gi... - gi\|165925393\|ref\|ZP_02221225.1\| DedA protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|165992457, gi... - gi\|166008075\|ref\|ZP_02228973.1\| DedA protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|166214199, gi... - gi\|166214199\|ref\|ZP_02240234.1\| DedA protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|167051557, gi... - gi\|167399053\|ref\|ZP_02304577.1\| DedA protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|167421269, gi... - gi\|167421269\|ref\|ZP_02313022.1\| DedA protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... gi\|167424648, gi... - gi\|167424648\|ref\|ZP_02316401.1\| DedA protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|...	166.0	[0..1]	[218..1]
gi\|85059596, gi\|... - gi\|85059596\|ref\|YP_455298.1\| hypothetical protein SG1618 [Sodalis glossinidius str. 'morsitans'], gi...	165.0	[0..1]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLIYFLIDF ILHIDVHLAE LVAEYGVWVY AILFLILFCE TGLVVTPFLP GDSLLFVAGA  60
   61 LASLETNDLN VHMMVVLMLI AAIVGDAVNY TIGRLFGEKL FSNPNSKIFR RSYLDKTHQF 120
  121 YEKHGGKTII LARFVPIVRT FAPFVAGMGH MSYRHFAAYN VIGALLWVLL FTYAGYFFGT 180
  181 IPMVQDNLKL LIVGIIVVSI LPGVIEIIRH KRAAARAAK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.79588
Match:	PF09335.2
Description:	No description for PF09335.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits