YRC Public Data Repository - Protein Structure Prediction

Protein:	DDLA_ECOLI
Organism:	Escherichia coli
Length:	364 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DDLA_ECOLI.

Description	E-value	Query Range	Subject Range
DDL_BACSK - D-alanine--D-alanine ligase OS=Bacillus clausii (strain KSM-K16) GN=ddl PE=3 SV=1	352.0	[0..1]	[364..1]
gi\|81239869, gi\|... - gi\|82775721\|ref\|YP_402068.1\| D-alanyl-alanine synthetase A [Shigella dysenteriae Sd197], gi\|81239869...	350.0	[0..1]	[364..1]
gi\|77974377 - gi\|77974377\|ref\|ZP_00829918.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Ye...	350.0	[0..1]	[364..1]
gi\|187731227, gi... - gi\|75176852\|ref\|ZP_00696968.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Sh...	350.0	[0..1]	[364..1]
gi\|188487411, gi... - gi\|75512440\|ref\|ZP_00734979.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es...	350.0	[0..1]	[364..1]
gi\|191173486, gi... - gi\|75238709\|ref\|ZP_00722697.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es... gi\|218557291, gi... - gi\|218557291\|ref\|YP_002390204.1\| D-alanyl-alanine synthetase A [Escherichia coli S88], gi\|218364060\|... DDLA_ECOL6 - D-alanine--D-alanine ligase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ddlA... gi\|237707631, gi... - gi\|237707631\|ref\|ZP_04538112.1\| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA], gi\|226898... gi\|227884616, gi... - gi\|227884616\|ref\|ZP_04002421.1\| D-alanyl-alanine synthetase A [Escherichia coli 83972], gi\|227838702... DDLA_ECOL6 - D-alanine--D-alanine ligase A OS=Escherichia coli O6 GN=ddlA PE=3 SV=1 gi\|91209444, gi\|... - gi\|91209444\|ref\|YP_539430.1\| D-alanyl-alanine synthetase A [Escherichia coli UTI89], gi\|91071018\|gb\|... gi\|110640642, gi... - gi\|110640642\|ref\|YP_668370.1\| D-alanyl-alanine synthetase A [Escherichia coli 536], gi\|110342234\|gb\|... gi\|117622644, gi... - gi\|117622644\|ref\|YP_851557.1\| D-alanyl-alanine synthetase A [Escherichia coli APEC O1], gi\|115511768...	350.0	[0..1]	[364..1]
gi\|205333511, gi... - gi\|205333511\|gb\|EDZ20275.1\| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar... gi\|167992222, gi... - gi\|205329453\|gb\|EDZ16217.1\| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar... gi\|205349721, gi... - gi\|205349721\|gb\|EDZ36352.1\| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar... gi\|197289552, gi... - gi\|197289552\|gb\|EDY28915.1\| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Salmonella ent... DDLA_SALTY - D-alanine--D-alanine ligase A OS=Salmonella typhimurium GN=ddlA PE=1 SV=2 DDLA_SALTI - D-alanine--D-alanine ligase A OS=Salmonella typhi GN=ddlA PE=3 SV=2 gi\|214002267 - gi\|214002267\|ref\|ZP_03413002.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica s... DDLA_SALTI - D-alanine--D-alanine ligase A OS=Salmonella typhi GN=ddlA PE=3 SV=2 gi\|16759358 - gi\|16759358\|ref\|NP_454975.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica sero... gi\|213582565 - gi\|213582565\|ref\|ZP_03364391.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica s... gi\|213427803 - gi\|213427803\|ref\|ZP_03360553.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica s... DDLA_SALTY - D-alanine--D-alanine ligase A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ddl... gi\|213647649 - gi\|213647649\|ref\|ZP_03377702.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica s... gi\|29142870, gi\|... - gi\|29142870\|ref\|NP_806212.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica sero... gi\|213622190 - gi\|213622190\|ref\|ZP_03374973.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica s... gi\|200390819, gi... - gi\|200390819\|ref\|ZP_03217430.1\| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica ser... gi\|197213216, gi... - gi\|197249513\|ref\|YP_002145360.1\| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica se... gi\|213161233 - gi\|213161233\|ref\|ZP_03346943.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica s... gi\|204926723, gi... - gi\|204926723\|ref\|ZP_03217925.1\| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica ser... gi\|194446690, gi... - gi\|194446690\|ref\|YP_002039619.1\| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica se... gi\|205344117, gi... - gi\|205344117\|gb\|EDZ30881.1\| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar... gi\|194735047, gi... - gi\|194735047\|ref\|YP_002113409.1\| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica se... gi\|194459144, gi... - gi\|194472780\|ref\|ZP_03078764.1\| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=ddl_1] [protein=D-alanyl-alanine synthetase A] [protein_id=YP_005236064.1] [location=complemen... DDLA_SALTY - D-alanine--D-alanine ligase A OS=Salmonella typhimurium GN=ddlA PE=1 SV=2	349.0	[0..1]	[364..1]
gi\|62178991, gi\|... - gi\|62178991\|ref\|YP_215408.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica sero... gi\|161364805, gi... - gi\|161615441\|ref\|YP_001589406.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica ...	348.0	[0..1]	[364..1]
gi\|74310948, gi\|... - gi\|74310948\|ref\|YP_309367.1\| D-alanyl-alanine synthetase A [Shigella sonnei Ss046], gi\|73854425\|gb\|A...	348.0	[0..1]	[364..1]
gi\|82542872, gi\|... - gi\|82542872\|ref\|YP_406819.1\| D-alanyl-alanine synthetase A [Shigella boydii Sb227], gi\|81244283\|gb\|A...	346.0	[0..1]	[364..1]

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Predicted Domain #1

Region A:
Residues: [1-364]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLRVGIVF GGKSAEHEVS LQSAKNIVDA IDKSRFDVVL LGIDKQGQWH VSDASNYLLN  60
   61 ADDPAHIALR PSATSLAQVP GKHEHQLIDA QNGQPLPTVD VIFPIVHGTL GEDGSLQGML 120
  121 RVANLPFVGS DVLASAACMD KDVTKRLLRD AGLNIAPFIT LTRANRHNIS FAEVESKLGL 180
  181 PLFVKPANQG SSVGVSKVTS EEQYAIAVDL AFEFDHKVIV EQGIKGREIE CAVLGNDNPQ 240
  241 ASTCGEIVLT SDFYAYDTKY IDEDGAKVVV PAAIAPEIND KIRAIAVQAY QTLGCAGMAR 300
  301 VDVFLTPENE VVINEINTLP GFTNISMYPK LWQASGLGYT DLITRLIELA LERHAADNAL 360
  361 KTTM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.39794
Match:	2i80A
Description:	No description for 2i80A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits