YRC Public Data Repository - Protein Structure Prediction

Protein:	DCUC_ECOLI
Organism:	Escherichia coli
Length:	461 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCUC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83363652, gi\|... - gi\|83375123\|ref\|ZP_00919887.1\| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...	231.0	[0..20]	[459..374]
gi\|25504467 - pir\|\|A95272 hypothetical protein SMa0151 [imported] - Sinorhizobium meliloti (strain 1021) magaplasm... gi\|16262534, gi\|... - gi\|16262534\|ref\|NP_435327.1\| hypothetical protein SMa0151 [Sinorhizobium meliloti 1021], gi\|14523143...	214.0	[0..71]	[461..1]
gi\|34483879 - gi\|34483879\|emb\|CAE10875.1\| LARGE INTEGRAL C4-DICARBOXYLATE MEMBRANE TRANSPORT PROTEIN,PUTATIVE [Wol... gi\|34558160 - gi\|34558160\|ref\|NP_907975.1\| C4-dicarboxylate membrane transporter [Wolinella succinogenes DSM 1740]	180.0	[0..28]	[460..3]
gi\|11351131 - pir\|\|B83001 probable C4-dicarboxylate transporter PA5169 [imported] - Pseudomonas aeruginosa (strain... DCTM_PSEAE - C4-dicarboxylate TRAP transporter large permease protein DctM OS=Pseudomonas aeruginosa (strain ATCC... gi\|126170062, gi... - gi\|84317807\|ref\|ZP_00966243.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|218894269, gi... - gi\|218894269\|ref\|YP_002443139.1\| putative C4-dicarboxylate transporter [Pseudomonas aeruginosa LESB5... gi\|107104270 - gi\|107104270\|ref\|ZP_01368188.1\| hypothetical protein PaerPA_01005344 [Pseudomonas aeruginosa PACS2]	179.0	[0..27]	[457..2]
gi\|194554935, gi... - gi\|84323909\|ref\|ZP_00971975.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|115588537, gi... - gi\|32044546\|ref\|ZP_00141647.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	178.0	[0..27]	[457..2]
gi\|25320905 - pir\|\|G83983 C4-dicarboxylate transport system (permease large protein) BH2671 [imported] - Bacillus ... gi\|15615234, gi\|... - gi\|15615234\|ref\|NP_243537.1\| C4-dicarboxylate transport system (permease large protein) [Bacillus ha...	177.0	[0..27]	[458..2]
gi\|15602138, gi\|... - gi\|15602138\|ref\|NP_245210.1\| hypothetical protein PM0273 [Pasteurella multocida subsp. multocida str...	177.0	[0..27]	[457..2]
gi\|109674555, gi... - gi\|154174636\|ref\|YP_001409179.1\| C4-dicarboxylate transport system permease, large subunit [Campylob...	177.0	[0..27]	[460..2]
gi\|157164109, gi... - gi\|157164109\|ref\|YP_001467735.1\| trap dicarboxylate transporter- dctm subunit [Campylobacter concisu...	176.0	[0..27]	[460..2]
gi\|4226003 - gi\|4226003\|emb\|CAA10758.1\| large integral C4-dicarboxylate membrane transport protein, putative [Wol...	175.0	[0..39]	[460..1]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTFIELLIG VVVIVGVARY IIKGYSATGV LFVGGLLLLI ISAIMGHKVL PSSQASTGYS  60
   61 ATDIVEYVKI LLMSRGGDLG MMIMMLCGFA AYMTHIGAND MVVKLASKPL QYINSPYLLM 120
  121 IAAYFVACLM SLAVSSATGL GVLLMATLFP VMVNVGISRG AAAAICASPA AIILAPTSGD 180
  181 VVLAAQASEM SLIDFAFKTT LPISIAAIIG MAIAHFFWQR YLDKKE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [227-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HISHEMLDVS EITTTAPAFY AILPFTPIIG VLIFDGKWGP QLHIITILVI CMLIASILEF  60
   61 LRSFNTQKVF SGLEVAY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [304-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGMADAFANV VMLLVAAGVF AQGLSTIGFI QSLISIATSF GSASIILMLV LVILTMLAAV  60
   61 TTGSGNAPFY AFVEMIPKLA HSSGINPAYL TIPMLQASNL GRTLSPVSGV VVAVAGMAKI 120
  121 SPFEVVKRTS VPVLVGLVIV IVATELMVPG TAAAVTGK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits