YRC Public Data Repository - Protein Structure Prediction

Protein:	DCUA_ECOLI
Organism:	Escherichia coli
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCUA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91190532, gi\|... - gi\|91224644\|ref\|ZP_01259905.1\| anaerobic C4-dicarboxylate transporter [Vibrio alginolyticus 12G01], ...	402.0	[0..1]	[433..1]
gi\|116186715, gi... - gi\|75857528\|ref\|ZP_00765142.1\| COG2704: Anaerobic C4-dicarboxylate transporter [Vibrio sp. Ex25], gi...	400.0	[0..1]	[433..1]
gi\|84378385, gi\|... - gi\|84386857\|ref\|ZP_00989882.1\| anaerobic C4-dicarboxylate transporter [Vibrio splendidus 12B01], gi\|... gi\|85837857, gi\|... - gi\|86144958\|ref\|ZP_01063290.1\| anaerobic C4-dicarboxylate transporter [Vibrio sp. MED222], gi\|858378...	399.0	[0..1]	[433..1]
gi\|153836878, gi... - gi\|153836878\|ref\|ZP_01989545.1\| anaerobic C4-dicarboxylate membrane transporter [Vibrio parahaemolyt... gi\|28809282, gi\|... - gi\|28809282\|dbj\|BAC62324.1\| anaerobic C4-dicarboxylate transporter [Vibrio parahaemolyticus RIMD 221... gi\|28900836, gi\|... - gi\|28900836\|ref\|NP_800491.1\| anaerobic C4-dicarboxylate transporter [Vibrio parahaemolyticus RIMD 22...	399.0	[0..1]	[433..1]
gi\|254223211, gi... - gi\|75823496\|ref\|ZP_00752993.1\| COG2704: Anaerobic C4-dicarboxylate transporter [Vibrio cholerae RC38... tr\|D7HAL9\|D7HAL9... - Anaerobic C4-dicarboxylate transporter OS=Vibrio cholerae RC385 GN=VCRC385_02388 PE=3 SV=1	392.0	[0..1]	[433..1]
gi\|37676574, gi\|... - gi\|37676574\|ref\|NP_936970.1\| anaerobic C4-dicarboxylate transporter [Vibrio vulnificus YJ016], gi\|37...	392.0	[0..15]	[433..40]
gi\|153825023, gi... - gi\|153825023\|ref\|ZP_01977690.1\| anaerobic C4-dicarboxylate membrane transporter [Vibrio cholerae MZO... gi\|227811828, gi... - gi\|227811828\|ref\|YP_002811838.1\| C4-dicarboxylate transporter, anaerobic [Vibrio cholerae M66-2], gi... gi\|229506631, gi... - gi\|229506631\|ref\|ZP_04396140.1\| C4-dicarboxylate like transporter [Vibrio cholerae BX 330286], gi\|22... gi\|11278444 - pir\|\|F82488 C4-dicarboxylate transporter, anaerobic VCA0205 [imported] - Vibrio cholerae (strain N16... gi\|229348680, gi... - gi\|229514700\|ref\|ZP_04404161.1\| C4-dicarboxylate like transporter [Vibrio cholerae TMA 21], gi\|22934... gi\|229517297, gi... - gi\|229517297\|ref\|ZP_04406742.1\| C4-dicarboxylate like transporter [Vibrio cholerae RC9], gi\|22934533... gi\|121549060, gi... - gi\|121586763\|ref\|ZP_01676546.1\| C4-dicarboxylate transporter, anaerobic [Vibrio cholerae 2740-80], g... gi\|229526172, gi... - gi\|229526172\|ref\|ZP_04415576.1\| C4-dicarboxylate like transporter [Vibrio cholerae bv. albensis VL42... gi\|124118967, gi... - gi\|153222330\|ref\|ZP_01953080.1\| C4-dicarboxylate transporter, anaerobic [Vibrio cholerae MAK 757], g... gi\|229605108, gi... - gi\|229605108\|ref\|YP_002875812.1\| C4-dicarboxylate like transporter [Vibrio cholerae MJ-1236], gi\|229... gi\|153816778, gi... - gi\|153816778\|ref\|ZP_01969445.1\| C4-dicarboxylate transporter, anaerobic [Vibrio cholerae NCTC 8457],... gi\|153822634, gi... - gi\|229510571\|ref\|ZP_04400051.1\| C4-dicarboxylate like transporter [Vibrio cholerae B33], gi\|22935301... gi\|15600974, gi\|... - gi\|9657597\|gb\|AAF96117.1\| C4-dicarboxylate transporter, anaerobic [Vibrio cholerae O1 biovar eltor s... gi\|125618520, gi... - gi\|75830980\|ref\|ZP_00760249.1\| COG2704: Anaerobic C4-dicarboxylate transporter [Vibrio cholerae MO10... gi\|75825755, gi\|... - gi\|75825755\|ref\|ZP_00755191.1\| COG2704: Anaerobic C4-dicarboxylate transporter [Vibrio cholerae O395... gi\|121629966, gi... - gi\|75816511\|ref\|ZP_00746979.1\| COG2704: Anaerobic C4-dicarboxylate transporter [Vibrio cholerae V52]...	390.0	[0..1]	[433..1]
gi\|75820424, gi\|... - gi\|75820424\|ref\|ZP_00750472.1\| COG2704: Anaerobic C4-dicarboxylate transporter [Vibrio cholerae V51]...	389.0	[0..1]	[433..1]
gi\|27366799, gi\|... - gi\|27366799\|ref\|NP_762326.1\| anaerobic C4-dicarboxylate transporter [Vibrio vulnificus CMCP6], gi\|27...	383.0	[0..15]	[433..15]
gi\|15603783, gi\|... - gi\|15603783\|ref\|NP_246857.1\| anaerobic C4-dicarboxylate transporter [Pasteurella multocida subsp. mu...	382.0	[0..1]	[433..1]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVVELIIVL LAIFLGARLG GIGIGFAGGL GVLVLAAIGV KPGNIPFDVI SIIMAVIAAI  60
   61 SAMQVAGGLD YLVHQTEKLL RRNPKYITIL APIVTYFLTI FAGTGNISLA TLPVIAEVAK 120
  121 EQGVKPCRPL STAVVSAQIA ITASPISAAV VYMSSVMEGH GISYLHLLSV VIPSTLLAVL 180
  181 VMSFLVTMLF N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [192-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKLSDDPIYR KRLEEGLVEL RGEKQIEIKS GAKTSVWLFL LGVVGVVIYA IINSPSMG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [250-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVEKPLMNTT NAILIIMLSV ATLTTVICKV DTDNILNSST FKAGMSACIC ILGVAWLGDT  60
   61 FVSNNIDWIK DTAGEVIQGH PWLLAVIFFF ASALLYSQAA TAKALMPMAL ALNVSPLTAV 120
  121 ASFAAVSGLF ILPTYPTLVA AVQMDDTGTT RIGKFVFNHP FFIPGTLGVA LAVCFGFVLG 180
  181 SFML

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits