YRC Public Data Repository - Protein Structure Prediction

Protein:	DAMX_ECOLI
Organism:	Escherichia coli
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAMX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|191167888, gi... - gi\|75228958\|ref\|ZP_00715550.1\| COG3266: Uncharacterized protein conserved in bacteria [Escherichia c...	170.0	[0..1]	[428..1]
gi\|208813560, gi... - gi\|208813560\|ref\|ZP_03254889.1\| DamX protein [Escherichia coli O157:H7 str. EC4045], gi\|208734837\|gb... gi\|208738623, gi... - gi\|208818500\|ref\|ZP_03258820.1\| DamX protein [Escherichia coli O157:H7 str. EC4042], gi\|208738623\|gb... gi\|209160644, gi... - gi\|209399244\|ref\|YP_002272822.1\| DamX protein [Escherichia coli O157:H7 str. EC4115], gi\|209160644\|g... gi\|217325133, gi... - gi\|217325133\|ref\|ZP_03441217.1\| DamX protein [Escherichia coli O157:H7 str. TW14588], gi\|217321354\|g... gi\|168785189, gi... - gi\|189374321\|gb\|EDU92737.1\| DamX protein [Escherichia coli O157:H7 str. EC869], gi\|168785189\|ref\|ZP_... gi\|168797155, gi... - gi\|189380036\|gb\|EDU98452.1\| DamX protein [Escherichia coli O157:H7 str. EC508], gi\|168797155\|ref\|ZP_... gi\|195934876 - gi\|195934876\|ref\|ZP_03080258.1\| hypothetical protein EscherichcoliO157_00200 [Escherichia coli O157:... gi\|208728017, gi... - gi\|208808216\|ref\|ZP_03250553.1\| DamX protein [Escherichia coli O157:H7 str. EC4206], gi\|208728017\|gb... gi\|254594702, gi... - gi\|254795302\|ref\|YP_003080139.1\| membrane protein, interferes with cell division [Escherichia coli O... gi\|168759409, gi... - gi\|189369534\|gb\|EDU87950.1\| DamX protein [Escherichia coli O157:H7 str. EC4501], gi\|168759409\|ref\|ZP... gi\|189364625, gi... - gi\|189364625\|gb\|EDU83044.1\| DamX protein [Escherichia coli O157:H7 str. EC4486], gi\|168765732\|ref\|ZP... gi\|168772724, gi... - gi\|187771358\|gb\|EDU35202.1\| DamX protein [Escherichia coli O157:H7 str. EC4196], gi\|168772724\|ref\|ZP... gi\|189002459, gi... - gi\|189002459\|gb\|EDU71445.1\| DamX protein [Escherichia coli O157:H7 str. EC4076], gi\|168779468\|ref\|ZP... gi\|15833484, gi\|... - gi\|15833484\|ref\|NP_312257.1\| hypothetical protein ECs4230 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168753137, gi... - gi\|189359174\|gb\|EDU77593.1\| DamX protein [Escherichia coli O157:H7 str. EC4401], gi\|168753137\|ref\|ZP... DAMX_ECO57 - Cell division protein DamX OS=Escherichia coli O157:H7 GN=damX PE=3 SV=1 gi\|12518011, gi\|... - gi\|15803891\|ref\|NP_289927.1\| hypothetical protein Z4741 [Escherichia coli O157:H7 EDL933], gi\|125180... gi\|209747490, gi... - pir\|\|D86003 hypothetical protein damX [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	167.0	[0..1]	[428..1]
gi\|110807220, gi... - gi\|110807220\|ref\|YP_690740.1\| hypothetical protein SFV_3393 [Shigella flexneri 5 str. 8401], gi\|1106...	166.0	[0..1]	[428..1]
gi\|227839397, gi... - gi\|227883518\|ref\|ZP_04001323.1\| DamX protein [Escherichia coli 83972], gi\|227839397\|gb\|EEJ49863.1\| D... gi\|75241522, gi\|... - gi\|75241522\|ref\|ZP_00725367.1\| COG3266: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|26249982, gi\|... - gi\|26249982\|ref\|NP_756022.1\| hypothetical protein c4158 [Escherichia coli CFT073], gi\|26110411\|gb\|AA...	166.0	[0..1]	[428..1]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	166.0	[0..2]	[387..970]
gi\|218367214, gi... - gi\|218560445\|ref\|YP_002393358.1\| hypothetical protein ECS88_3773 [Escherichia coli S88], gi\|21836721... gi\|115514780, gi... - gi\|117625656\|ref\|YP_858979.1\| hypothetical protein APECO1_3075 [Escherichia coli APEC O1], gi\|115514... gi\|91212860, gi\|... - gi\|91212860\|ref\|YP_542846.1\| hypothetical protein UTI89_C3886 [Escherichia coli UTI89], gi\|91074434\|... gi\|226902379, gi... - gi\|237703115\|ref\|ZP_04533596.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	166.0	[0..1]	[428..1]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	166.0	[0..2]	[398..1521]
gi\|81247154, gi\|... - gi\|82545743\|ref\|YP_409690.1\| hypothetical protein SBO_3375 [Shigella boydii Sb227], gi\|81247154\|gb\|A...	166.0	[0..1]	[428..1]
gi\|73857370, gi\|... - gi\|74313893\|ref\|YP_312312.1\| hypothetical protein SSON_3519 [Shigella sonnei Ss046], gi\|73857370\|gb\|...	166.0	[0..1]	[428..1]
gi\|75260323, gi\|... - gi\|75260323\|ref\|ZP_00731591.1\| COG3266: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75211754, gi\|... - gi\|75211754\|ref\|ZP_00711818.1\| COG3266: Uncharacterized protein conserved in bacteria [Escherichia c...	165.0	[0..1]	[428..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEFKPEDEL KPDPSDRRTG RSRQSSERSE RTERGEPQIN FDDIELDDTD DRRPTRAQKE  60
   61 RNEEPEIEEE IDESEDETVD EERVERRPRK RKKAASKPAS RQYMMMGVGI LVLLLLIIGI 120
  121 GSALKAPSTT SSDQTASGEK SIDLAGNATD QANGVQPAPG TT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [163-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAENTQQDVS LPPISSTPTQ GQTPVATDGQ QRVEVQGDLN NALTQPQNQQ QLNNVAVNST  60
   61 LPTEPATVAP VRNGNASRDT AKTQTAERPS TTRPARQQAV IEPKKPQATV KTEPKPVAQT 120
  121 PKRTEPAAPV ASTKAPAATS TPAPKETATT APVQTASPAQ TTATPAAGAK TAGNV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [338-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSLKSAPSSH YTLQLSSSSN YDNLNGWAKK ENLKNYVVYE TTRNGQPWYV LVSGVYASKE  60
   61 EAKKAVSTLP ADVQAKNPWA KPLRQVQADL K

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.31
Match:	1utaA
Description:	Solution structure of the C-terminal RNP domain from the divisome protein FtsN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits