YRC Public Data Repository - Protein Structure Prediction

Protein:	DADA_ECOLI
Organism:	Escherichia coli
Length:	432 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DADA_ECOLI.

Description	E-value	Query Range	Subject Range
DADA_SHIDS - D-amino acid dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dadA PE=3 SV=1	306.0	[0..1]	[432..1]
gi\|238713180, gi... - gi\|77956652\|ref\|ZP_00820737.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Yersinia bercov...	306.0	[0..1]	[431..1]
DADA_NEIMB - D-amino acid dehydrogenase small subunit OS=Neisseria meningitidis serogroup B GN=dadA PE=3 SV=1 gi\|11353117 - pir\|\|A81228 D-amino acid dehydrogenase, small chain NMB0176 [imported] - Neisseria meningitidis (str... DADA_NEIMB - D-amino acid dehydrogenase OS=Neisseria meningitidis serogroup B (strain MC58) GN=dadA PE=3 SV=1	305.0	[0..1]	[415..1]
gi\|68347621, gi\|... - gi\|70733322\|ref\|YP_263096.1\| D-amino acid dehydrogenase small subunit [Pseudomonas fluorescens Pf-5]...	305.0	[0..1]	[431..1]
DADA_SHIB3 - D-amino acid dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dadA PE=3 ...	305.0	[0..1]	[432..1]
gi\|217328456, gi... - gi\|217328456\|ref\|ZP_03444538.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|208737611, gi... - gi\|208822126\|ref\|ZP_03262445.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|209395760, gi... - gi\|209395760\|ref\|YP_002270129.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7... gi\|194423978, gi... - gi\|194436995\|ref\|ZP_03069094.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli 101-1], ... gi\|208814910, gi... - gi\|208814910\|ref\|ZP_03256089.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|193071169, gi... - gi\|193071169\|ref\|ZP_03052092.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli E110019]... gi\|194426077, gi... - gi\|194426077\|ref\|ZP_03058633.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli B171], g... gi\|191168531, gi... - gi\|191168531\|ref\|ZP_03030317.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli B7A], gi... gi\|191170908, gi... - gi\|191170908\|ref\|ZP_03032459.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli F11], gi... gi\|189360057, gi... - gi\|189403544\|ref\|ZP_02796088.2\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|189405025, gi... - gi\|189405025\|ref\|ZP_02812699.2\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|26107904, gi\|... - gi\|26247503\|ref\|NP_753543.1\| D-amino acid dehydrogenase small subunit [Escherichia coli CFT073], gi\|... gi\|188999931, gi... - gi\|189010471\|ref\|ZP_02807555.2\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|189356326, gi... - gi\|189402296\|ref\|ZP_02781562.2\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|170681298, gi... - gi\|170681298\|ref\|YP_001744012.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli SMS-3-5... gi\|187776451, gi... - gi\|187776451\|ref\|ZP_02802803.2\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ...	305.0	[0..1]	[432..3]
gi\|213581080 - gi\|213581080\|ref\|ZP_03362906.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... gi\|213426622 - gi\|213426622\|ref\|ZP_03359372.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... gi\|213648192 - gi\|213648192\|ref\|ZP_03378245.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... gi\|213612759 - gi\|213612759\|ref\|ZP_03370585.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... gi\|16760693 - gi\|16760693\|ref\|NP_456310.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. en... DADA_SALTI - D-amino acid dehydrogenase OS=Salmonella typhi GN=dadA PE=3 SV=1 gi\|213162932 - gi\|213162932\|ref\|ZP_03348642.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... gi\|29137176, gi\|... - gi\|29141549\|ref\|NP_804891.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. en... gi\|214002620 - gi\|214002620\|ref\|ZP_03413355.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... DADA_SALTI - D-amino acid dehydrogenase small subunit OS=Salmonella typhi GN=dadA PE=3 SV=1	305.0	[0..1]	[432..1]
gi\|84388540, gi\|... - gi\|84388540\|ref\|ZP_00991087.1\| D-amino acid dehydrogenase small subunit [Vibrio splendidus 12B01], g...	304.0	[0..1]	[416..1]
gi\|91071976, gi\|... - gi\|91210402\|ref\|YP_540388.1\| D-amino acid dehydrogenase small subunit [Escherichia coli UTI89], gi\|9... gi\|117623403, gi... - gi\|117623403\|ref\|YP_852316.1\| D-amino acid dehydrogenase small subunit [Escherichia coli APEC O1], g... gi\|226899902, gi... - gi\|237705145\|ref\|ZP_04535626.1\| D-amino acid dehydrogenase small subunit [Escherichia sp. 3_2_53FAA]...	304.0	[0..1]	[432..3]
gi\|168820549, gi... - gi\|205342707\|gb\|EDZ29471.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... gi\|168237865, gi... - gi\|197289224\|gb\|EDY28591.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... gi\|205332105, gi... - gi\|205332105\|gb\|EDZ18869.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... DADA_SALPA - D-amino acid dehydrogenase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=dadA PE=3 SV=1 gi\|204927940, gi... - gi\|204927940\|ref\|ZP_03219141.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... DADA_SALPA - D-amino acid dehydrogenase small subunit OS=Salmonella paratyphi A GN=dadA PE=3 SV=1 DADA_SALPK - D-amino acid dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=dadA PE=3 SV=1 DADA_SALA4 - D-amino acid dehydrogenase OS=Salmonella agona (strain SL483) GN=dadA PE=3 SV=1 DADA_SALSV - D-amino acid dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=dadA PE=3 SV=1 gi\|194471000, gi... - gi\|194471000\|ref\|ZP_03076984.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp....	304.0	[0..1]	[432..1]

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Predicted Domain #1

Region A:
Residues: [1-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVVILGSGV VGVASAWYLN QAGHEVTVID REPGAALETS AANAGQISPG YAAPWAAPGV  60
   61 PLKAIKWMFQ RHAPLAVRLD GTQFQLKWMW QMLRNCDTSH YMENKGRMVR LAEYSRDCLK 120
  121 ALRAETNIQY EGRQGGTLQL FRTEQQYENA TRDIAVLEDA GVPYQLLESS RLAEVEPALA 180
  181 EVAHKLTGGL QLPNDETGDC QLFTQNLARM AEQAGVKFRF NTPVDQLLCD GEQIYGVKCG 240
  241 DEVIKADAYV MAFGSYSTAM LKGIVDIPVY PLKGYSLTIP IAQEDGAPVS TILDETYKIA 300
  301 ITRFDNRIRV GGMAEIVGFN TELLQPRRET LEMVVRDLYP RGGHVEQATF WTGLRPMTPD 360
  361 GTPVVGRTRF KNLWLNTGHG TLGWTMACGS GQLLSDLLSG RTPAIPYEDL SVARYSRGFT 420
  421 PSRPGHLHGA HS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.39794
Match:	2gagB
Description:	No description for 2gagB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits