YRC Public Data Repository - Protein Structure Prediction

Protein:	CYSN_ECOLI
Organism:	Escherichia coli
Length:	475 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYSN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|56377788 - gi\|56377788\|dbj\|BAD74118.1\| elongation factor-1 alpha (EF-1alpha) [Pelodiscus sinensis]	466.0	[0..21]	[459..1]
EF1A_CHICK - Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1	465.0	[0..21]	[459..1]
gi\|15805031, gi\|... - gi\|15805031\|ref\|NP_284925.1\| eukaryotic translation elongation factor 1 alpha 2 [Rattus norvegicus],...	465.0	[0..21]	[459..1]
gi\|62202271, gi\|... - gi\|62955563\|ref\|NP_001017795.1\| hypothetical protein LOC550493 [Danio rerio], gi\|62202271\|gb\|AAH9288...	465.0	[0..21]	[459..1]
gi\|62897525 - gi\|62897525\|dbj\|BAD96702.1\| eukaryotic translation elongation factor 1 alpha 1 variant [Homo sapiens...	464.0	[0..21]	[459..1]
gi\|56403849\|emb\|... - hypothetical protein [Pongo pygmaeus] gi\|56403849 - gi\|56403849\|emb\|CAI29710.1\| hypothetical protein [Pongo abelii]	464.0	[0..21]	[459..1]
gi\|13278382 - gi\|13278382\|gb\|AAH04005.1\| Eukaryotic translation elongation factor 1 alpha 1 [Mus musculus]	464.0	[0..21]	[459..1]

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Predicted Domain #1

Region A:
Residues: [1-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTALAQQIA NEGGVEAWMI AQQHKSLLRF LTCGSVDDGK STLIGRLLHD TRQIYEDQLS  60
   61 SLHNDSKRHG TQGEKLDLAL LVDGLQAERE QGITIDVAYR YFSTEKRKFI IADTPGHEQY 120
  121 TRNMATGAST CELAILLIDA RKGVLDQTRR HSFISTLLGI KHLVVAINKM DLVDYSEETF 180
  181 TRIREDYLTF AGQLPGNLDI RFVPLSALEG DNVASQSESM PWYSGPTLLE VLETVEIQRV 240
  241 VDAQPMRFPV QYVNRPNLDF RGYAGTLASG RVEVGQRVKV LPSGVESNVA RIVTFDGDRE 300
  301 EAFAGEAITL VLTDEIDISR GDLLLAADEA LPAVQSASVD VVWMAEQPLS PGQSYDIKIA 360
  361 GKKTRARVDG IRYQVDINNL TQREVENLPL NGIGLVDLTF DEPLVLDRYQ QNPVTGGLIF 420
  421 IDRLSNVTVG AGMVHEPVSQ ATAAPSEFSA FELELNALVR RHFPHWGARD LLGDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	1zunB
Description:	Crystal Structure of a GTP-Regulated ATP Sulfurylase Heterodimer from Pseudomonas syringae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits