YRC Public Data Repository - Protein Structure Prediction

Protein:	CYSA_ECOLI
Organism:	Escherichia coli
Length:	365 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYSA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15643988, gi\|... - gi\|4981786\|gb\|AAD36307.1\|AE001779_9 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|281412971\|ref... - ABC transporter related protein [Thermotoga naphthophila RKU-10] gi\|170289367, gi... - gi\|170289367\|ref\|YP_001739605.1\| ABC transporter related [Thermotoga sp. RQ2], gi\|170176870\|gb\|ACB09... gi\|7442603 - pir\|\|A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	383.0	[0..1]	[356..1]
gi\|18894174, gi\|... - gi\|18978342\|ref\|NP_579699.1\| putative multiple sugar-binding transport ATP-binding protein [Pyrococc...	378.0	[0..1]	[356..11]
gi\|7442503 - pir\|\|H71241 probable multiple sugar-binding transport ATP-binding protein - Pyrococcus horikoshii gi\|3256580, gi\|1... - gi\|3256580\|dbj\|BAA29263.1\| 375aa long hypothetical multiple sugar-binding transport ATP-binding prot...	377.0	[0..1]	[356..4]
CYSA_ECOL6 - Sulfate/thiosulfate import ATP-binding protein CysA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC ... CYSA_ECOL6 - Sulfate/thiosulfate import ATP-binding protein CysA OS=Escherichia coli O6 GN=cysA PE=3 SV=1 gi\|227887468, gi... - gi\|227887468\|ref\|ZP_04005273.1\| sulfate/thiosulfate transporter subunit [Escherichia coli 83972], gi... gi\|117624629, gi... - gi\|117624629\|ref\|YP_853542.1\| sulfate/thiosulfate transporter subunit [Escherichia coli APEC O1], gi... gi\|226901312, gi... - gi\|237704946\|ref\|ZP_04535427.1\| sulfate/thiosulfate transporter subunit [Escherichia sp. 3_2_53FAA],... gi\|91211760, gi\|... - gi\|91211760\|ref\|YP_541746.1\| sulfate/thiosulfate transporter subunit [Escherichia coli UTI89], gi\|91... gi\|218366138, gi... - gi\|218559369\|ref\|YP_002392282.1\| sulfate/thiosulfate transporter subunit [Escherichia coli S88], gi\|... gi\|218428123, gi... - gi\|218690559\|ref\|YP_002398771.1\| sulfate/thiosulfate transporter subunit [Escherichia coli ED1a], gi...	376.0	[0..1]	[365..1]
gi\|194432185, gi... - gi\|83570643\|ref\|ZP_00922086.1\| COG1118: ABC-type sulfate/molybdate transport systems, ATPase compone...	376.0	[0..1]	[365..1]
gi\|56966313 - gi\|56966313\|pdb\|1V43\|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter	376.0	[0..1]	[356..10]
gi\|82777815, gi\|... - gi\|82777815\|ref\|YP_404164.1\| sulfate/thiosulfate transporter subunit [Shigella dysenteriae Sd197], g...	375.0	[0..1]	[365..1]
gi\|89055074, gi\|... - gi\|89055074\|ref\|YP_510525.1\| ABC transporter related [Jannaschia sp. CCS1], gi\|88864623\|gb\|ABD55500....	375.0	[0..3]	[359..4]

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Predicted Domain #1

Region A:
Residues: [1-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIEIANIKK SFGRTQVLND ISLDIPSGQM VALLGPSGSG KTTLLRIIAG LEHQTSGHIR  60
   61 FHGTDVSRLH ARDRKVGFVF QHYALFRHMT VFDNIAFGLT VLPRRERPNA AAIKAKVTKL 120
  121 LEMVQLAHLA DRYPAQLSGG QKQRVALARA LAVEPQILLL DEPFGALDAQ VRKELRRWLR 180
  181 QLHEELKFTS VFVTHDQEEA TEVADRVVVM SQGNIEQADA PDQVWREPAT RFVLEFMGEV 240
  241 NRLQGTIRGG QFHVGAHRWP LGYTPAYQGP VDLFLRPWEV DISRRTSLDS PLPVQVLEAS 300
  301 PKGHYTQLVV QPLGWYNEPL TVVMHGDDAP QRGERLFVGL QHARLYNGDE RIETRDEELA 360
  361 LAQSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.69897
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits