YRC Public Data Repository - Protein Structure Prediction

Protein:	CYOD_ECOLI
Organism:	Escherichia coli
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYOD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|114536608, gi... - gi\|114707979\|ref\|ZP_01440871.1\| Prokaryotic Cytochrome C oxidase subunit IV [Fulvimarina pelagi HTCC...	142.0	[0..4]	[108..19]
gi\|1773113 - gi\|1773113\|gb\|AAB40185.1\| cytochrome o ubiquinol oxidase C subunit [Escherichia coli]	138.0	[0..1]	[109..28]
gi\|115511813, gi... - gi\|117622689\|ref\|YP_851602.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli APEC O1], ...	137.0	[0..1]	[109..28]
gi\|33593692, gi\|... - gi\|33593692\|ref\|NP_881336.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella pertussis Tohama I]... gi\|33565846 - gi\|33565846\|emb\|CAE36392.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella parapertussis] gi\|33595767 - gi\|33595767\|ref\|NP_883410.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella parapertussis 12822... gi\|33600293, gi\|... - gi\|33600293\|ref\|NP_887853.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella bronchiseptica RB50...	128.0	[0..3]	[108..19]
gi\|25331182 - pir\|\|AD3489 cytochrome o ubiquinol oxidase operon protein cyod [imported] - Brucella melitensis (str... gi\|17983942, gi\|... - gi\|17988181\|ref\|NP_540815.1\| cytochrome O ubiquinol oxidase operon protein CYOD [Brucella melitensis...	127.0	[0..2]	[108..30]
gi\|197214429, gi... - gi\|197250726\|ref\|YP_002145421.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica sub... gi\|197264545, gi... - gi\|197264545\|ref\|ZP_03164619.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subs... gi\|197094801, gi... - gi\|197363324\|ref\|YP_002142961.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subs... gi\|197938177, gi... - gi\|198243661\|ref\|YP_002214394.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica sub... gi\|194446490, gi... - gi\|194446490\|ref\|YP_002039682.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica sub... gi\|194408892, gi... - gi\|194450588\|ref\|YP_002044475.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subs... gi\|194456951, gi... - gi\|194470587\|ref\|ZP_03076571.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subs... gi\|194737366, gi... - gi\|194737366\|ref\|YP_002113471.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica sub... gi\|205340021, gi... - gi\|205340021\|gb\|EDZ26785.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subsp. e... gi\|168261126, gi... - gi\|205349794\|gb\|EDZ36425.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subsp. e... gi\|168465531, gi... - gi\|195631677\|gb\|EDX50197.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subsp. e... gi\|205344082, gi... - gi\|205344082\|gb\|EDZ30846.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subsp. e... gi\|205323488, gi... - gi\|205323488\|gb\|EDZ11327.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subsp. e... gi\|238911428 - gi\|238911428\|ref\|ZP_04655265.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp... gi\|167992292, gi... - gi\|205329509\|gb\|EDZ16273.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subsp. e... gi\|168232415, gi... - gi\|205333521\|gb\|EDZ20285.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subsp. e... gi\|197289479, gi... - gi\|197289479\|gb\|EDY28842.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=cyoD] [protein=cytochrome o ubiquinol oxidase subunit IV] [protein_id=YP_005236134.1] [locatio... gi\|213857960 - gi\|213857960\|ref\|ZP_03384931.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp... gi\|214000398 - gi\|214000398\|ref\|ZP_03411133.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp... gi\|224466805, gi... - gi\|224582278\|ref\|YP_002636076.1\| cytochrome o ubiquinol oxidase C subunit [Salmonella enterica subsp... gi\|213052103 - gi\|213052103\|ref\|ZP_03344981.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp... gi\|213416725 - gi\|213416725\|ref\|ZP_03349869.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp... gi\|213584681 - gi\|213584681\|ref\|ZP_03366507.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp... gi\|213649241 - gi\|213649241\|ref\|ZP_03379294.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp... gi\|200389690, gi... - gi\|200389690\|ref\|ZP_03216301.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subs... gi\|204927364, gi... - gi\|204927364\|ref\|ZP_03218566.1\| cytochrome o ubiquinol oxidase, subunit IV [Salmonella enterica subs... gi\|206707723, gi... - gi\|207855920\|ref\|YP_002242571.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subs... gi\|213023462 - gi\|213023462\|ref\|ZP_03337909.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp... gi\|25331177, gi\|... - gi\|25331177\|pir\|\|AC0557 cytochrome o ubiquinol oxidase C chain [imported] - Salmonella enterica subs... gi\|16759420 - gi\|16759420\|ref\|NP_455037.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp. e... gi\|16418947, gi\|... - gi\|16763821\|ref\|NP_459436.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella typhimurium LT2],... gi\|29138440, gi\|... - gi\|29142808\|ref\|NP_806150.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp. e... gi\|160865730, gi... - gi\|161504383\|ref\|YP_001571495.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subs... gi\|161615370, gi... - gi\|161615370\|ref\|YP_001589335.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subs... gi\|62126685, gi\|... - gi\|62179052\|ref\|YP_215469.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp. e... gi\|56414404, gi\|... - gi\|56414404\|ref\|YP_151479.1\| cytochrome o ubiquinol oxidase subunit IV [Salmonella enterica subsp. e...	123.0	[0..1]	[109..1]
gi\|187431208, gi... - gi\|75176903\|ref\|ZP_00697019.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Shige...	123.0	[0..1]	[109..1]
gi\|113529472, gi... - gi\|116694973\|ref\|YP_729184.1\| bo3-type chinol oxidase, subunit IV [Ralstonia eutropha H16], gi\|11352...	122.0	[0..2]	[108..14]
gi\|163842321, gi... - gi\|163842321\|ref\|YP_001626725.1\| cytochrome o ubiquinol oxidase subunit IV [Brucella suis ATCC 23445... gi\|161618035, gi... - gi\|161618035\|ref\|YP_001591922.1\| cytochrome o ubiquinol oxidase subunit IV [Brucella canis ATCC 2336... gi\|62289032, gi\|... - gi\|62289032\|ref\|YP_220825.1\| QoxD, ubiquinol oxidase subunit IV [Brucella abortus bv. 1 str. 9-941],... gi\|82698969 - gi\|82698969\|ref\|YP_413543.1\| cytochrome C oxidase subunit IV [Brucella melitensis biovar Abortus 230... gi\|82615070 - gi\|82615070\|emb\|CAJ09998.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella melitensis biovar ... gi\|254694846 - gi\|254694846\|ref\|ZP_05156674.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus bv. 3 ... gi\|254696475 - gi\|254696475\|ref\|ZP_05158303.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus bv. 2 ... gi\|254709204 - gi\|254709204\|ref\|ZP_05171015.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella pinnipedialis ... gi\|254713371 - gi\|254713371\|ref\|ZP_05175182.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella ceti M644/93/1... gi\|148560321, gi... - gi\|148560321\|ref\|YP_001258092.1\| cytochrome o ubiquinol oxidase subunit IV [Brucella ovis ATCC 25840... gi\|254705226 - gi\|254705226\|ref\|ZP_05167054.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella suis bv. 3 str... gi\|254707255 - gi\|254707255\|ref\|ZP_05169083.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella pinnipedialis ... gi\|254731387 - gi\|254731387\|ref\|ZP_05189965.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus bv. 4 ... gi\|254716271 - gi\|254716271\|ref\|ZP_05178082.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella ceti M13/05/1] gi\|254718265 - gi\|254718265\|ref\|ZP_05180076.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella sp. 83/13] gi\|189018879, gi... - gi\|189023307\|ref\|YP_001934075.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus S19],...	122.0	[0..2]	[108..3]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHSTDHSGA SHGSVKTYMT GFILSIILTV IPFWMVMTGA ASPAVILGTI LAMAVVQVLV  60
   61 HLVCFLHMNT KSDEGWNMTA FVFTVLIIAI LVVGSIWIMW NLNYNMMMH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.431798
Match:	PF03626.5
Description:	No description for PF03626.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits