YRC Public Data Repository - Protein Structure Prediction

Protein:	CVPA_ECOLI
Organism:	Escherichia coli
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CVPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|37527054, gi\|... - gi\|37527054\|ref\|NP_930398.1\| colicin V production protein [Photorhabdus luminescens subsp. laumondii...	138.0	[0..1]	[160..1]
gi\|227327253 - gi\|227327253\|ref\|ZP_03831277.1\| colicin V production protein [Pectobacterium carotovorum subsp. caro... gi\|49612502, gi\|... - gi\|50121976\|ref\|YP_051143.1\| colicin V production protein [Pectobacterium atrosepticum SCRI1043], gi...	135.0	[0..1]	[161..1]
gi\|238785197, gi... - gi\|77957377\|ref\|ZP_00821435.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|238718694, gi... - gi\|77960843\|ref\|ZP_00824698.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	133.0	[0..1]	[160..1]
gi\|69140838, gi\|... - gi\|92117815\|ref\|YP_577544.1\| colicin V production protein [Nitrobacter hamburgensis X14], gi\|9180070...	132.0	[0..2]	[157..31]
gi\|52307109, gi\|... - gi\|52425057\|ref\|YP_088194.1\| CvpA protein [Mannheimia succiniciproducens MBEL55E], gi\|52307109\|gb\|AA...	132.0	[0..19]	[160..17]
gi\|77976972, gi\|... - gi\|77976972\|ref\|ZP_00832435.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	131.0	[0..1]	[160..1]
gi\|165992704, gi... - gi\|166008322\|ref\|ZP_02229220.1\| colicin V production protein [Yersinia pestis biovar Antiqua str. E1... gi\|165925155, gi... - gi\|165925155\|ref\|ZP_02220987.1\| colicin V production protein [Yersinia pestis biovar Orientalis str.... gi\|167398849, gi... - gi\|167398849\|ref\|ZP_02304373.1\| colicin V production protein [Yersinia pestis biovar Antiqua str. UG... gi\|166214249, gi... - gi\|166214249\|ref\|ZP_02240284.1\| colicin V production protein [Yersinia pestis biovar Antiqua str. B4... gi\|167424537, gi... - gi\|167424537\|ref\|ZP_02316290.1\| colicin V production protein [Yersinia pestis biovar Mediaevalis str... gi\|167421236, gi... - gi\|167421236\|ref\|ZP_02312989.1\| colicin V production protein [Yersinia pestis biovar Orientalis str.... gi\|169750309, gi... - gi\|170023775\|ref\|YP_001720280.1\| colicin V production protein [Yersinia pseudotuberculosis YPIII], g... gi\|167469034 - gi\|167469034\|ref\|ZP_02333738.1\| colicin V production protein [Yersinia pestis FV-1] gi\|165937015, gi... - gi\|89103389\|ref\|ZP_01175969.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|229694707, gi... - gi\|229838341\|ref\|ZP_04458500.1\| membrane protein required for colicin V production [Yersinia pestis ... gi\|77635317, gi\|... - gi\|77635317\|ref\|ZP_00797403.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|108808068, gi... - gi\|108808068\|ref\|YP_651984.1\| colicin V production protein [Yersinia pestis Antiqua], gi\|108779981\|g... gi\|229688455, gi... - gi\|229898907\|ref\|ZP_04514052.1\| membrane protein required for colicin V production [Yersinia pestis ... gi\|25299155 - pir\|\|AC0338 probable colicin V production protein cvpA [imported] - Yersinia pestis (strain CO92) gi\|153950398, gi... - gi\|77629661\|ref\|ZP_00792247.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|229902693, gi... - gi\|229902693\|ref\|ZP_04517810.1\| membrane protein required for colicin V production [Yersinia pestis ... gi\|45437046, gi\|... - gi\|45442182\|ref\|NP_993721.1\| colicin V production protein [Yersinia pestis biovar Microtus str. 9100... gi\|21958395, gi\|... - gi\|22125499\|ref\|NP_668922.1\| colicin V production protein [Yersinia pestis KIM], gi\|21958395\|gb\|AAM8... gi\|115348454, gi... - gi\|218929843\|ref\|YP_002347718.1\| colicin V production protein [Yersinia pestis CO92], gi\|16122975\|re... Q668X4\|Q668X4_YERPS - Putative colicin V production protein - Yersinia pseudotuberculosis gi\|51596932, gi\|... - gi\|51596932\|ref\|YP_071123.1\| colicin V production protein [Yersinia pseudotuberculosis IP 32953], gi... gi\|186896013, gi... - gi\|186896013\|ref\|YP_001873125.1\| colicin V production protein [Yersinia pseudotuberculosis PB1/+], g... gi\|149365245, gi... - gi\|149365245\|ref\|ZP_01887280.1\| putative colicin V production protein [Yersinia pestis CA88-4125], g... gi\|145210964, gi... - gi\|145599268\|ref\|YP_001163344.1\| colicin V production protein [Yersinia pestis Pestoides F], gi\|1452...	130.0	[0..1]	[160..1]
gi\|238710549, gi... - gi\|238751275\|ref\|ZP_04612769.1\| Colicin V production protein [Yersinia rohdei ATCC 43380], gi\|238710... gi\|77975506, gi\|... - gi\|77975506\|ref\|ZP_00831041.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	130.0	[0..1]	[160..1]
gi\|119767782, gi... - gi\|68547939\|ref\|ZP_00587462.1\| Colicin V production protein [Shewanella amazonensis SB2B], gi\|685143...	130.0	[0..1]	[160..1]
gi\|218321925, gi... - gi\|218708906\|ref\|YP_002416527.1\| Bacteriocin production protein [Vibrio splendidus LGP32], gi\|218321... gi\|85833858, gi\|... - gi\|86148375\|ref\|ZP_01066668.1\| Bacteriocin production protein [Vibrio sp. MED222], gi\|85833858\|gb\|EA...	129.0	[0..1]	[162..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWIDYAIIA VIAFSSLVSL IRGFVREALS LVTWGCAFFV ASHYYTYLSV WFTGFEDELV  60
   61 RNGIAIAVLF IATLIVGAIV NFVIGQLVEK TGLSGTDRVL GVCFGALRGV LIVAAILFFL 120
  121 DSFTGVSKSE DWSKSQLIPQ FSFIIRCFFD YLQSSSSFLP RA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.070581
Match:	PF02674.7
Description:	No description for PF02674.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits