YRC Public Data Repository - Protein Structure Prediction

Protein:	CSRA_ECOLI
Organism:	Escherichia coli
Length:	61 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSRA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|88773955, gi\|... - gi\|88794830\|ref\|ZP_01110535.1\| carbon storage regulator [Alteromonas macleodii 'Deep ecotype'], gi\|8...	98.0	[0..1]	[55..31]
CSRA_PSYWF - Carbon storage regulator homolog OS=Psychrobacter sp. (strain PRwf-1) GN=csrA PE=3 SV=1	97.0	[0..1]	[60..1]
CSRA_PSYCK - Carbon storage regulator homolog OS=Psychrobacter cryohalolentis (strain K5) GN=csrA PE=3 SV=1	97.0	[0..1]	[60..1]
gi\|255056263, gi... - gi\|255056263\|ref\|ZP_05308481.1\| carbon storage regulator, CsrA [Pectobacterium wasabiae WPP163], gi\|... CSRA_PECCP - Carbon storage regulator homolog OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=cs... gi\|224460032 - gi\|224460032\|gb\|ACN43566.1\| RsmA [Pectobacterium carotovorum subsp. carotovorum] CSRA_PECAS - Carbon storage regulator homolog OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN... gi\|86559126, gi\|... - gi\|86559126\|gb\|ABD04038.1\| RsmA [Pectobacterium carotovorum], gi\|5360966\|emb\|CAB46440.1\| RsmA protei... CSRA_PECSS - Carbon storage regulator homolog OS=Pectobacterium sp. (strain SCC3193) GN=csrA PE=3 SV=1 CSRA_ERWCT - Carbon storage regulator homolog OS=Erwinia carotovora subsp. atroseptica GN=csrA PE=1 SV=1 gi\|227329398 - gi\|227329398\|ref\|ZP_03833422.1\| carbon storage regulator [Pectobacterium carotovorum subsp. carotovo... gi\|227114945 - gi\|227114945\|ref\|ZP_03828601.1\| carbon storage regulator [Pectobacterium carotovorum subsp. brasilie... gi\|247537236, gi... - gi\|251788615\|ref\|YP_003003336.1\| carbon storage regulator, CsrA [Dickeya zeae Ech1591], gi\|247537236... gi\|242238446, gi... - gi\|242238446\|ref\|YP_002986627.1\| carbon storage regulator, CsrA [Dickeya dadantii Ech703], gi\|242130...	97.0	[0..1]	[61..1]
CSRA_SHEDO - Carbon storage regulator homolog OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 150...	97.0	[0..1]	[60..1]
CSRA_PSYA2 - Carbon storage regulator homolog OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=csrA PE=3 S...	96.0	[0..1]	[60..1]
gi\|90331476, gi\|... - gi\|90416723\|ref\|ZP_01224653.1\| carbon storage regulator [marine gamma proteobacterium HTCC2207], gi\|... gi\|90416723\|ref\|... - carbon storage regulator [marine gamma proteobacterium HTCC2207]	96.0	[0..1]	[60..1]
gi\|124509854, gi... - gi\|124546586\|ref\|ZP_01705653.1\| carbon storage regulator, CsrA [Shewanella putrefaciens 200], gi\|124... CSRA_SHESW - Carbon storage regulator homolog OS=Shewanella sp. (strain W3-18-1) GN=csrA PE=3 SV=1 CSRA_SHEPC - Carbon storage regulator homolog OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=csrA PE...	96.0	[0..1]	[60..1]
gi\|165922322, gi... - gi\|165925710\|ref\|ZP_02221542.1\| carbon storage regulator [Yersinia pestis biovar Orientalis str. F19... gi\|165990932, gi... - gi\|166010025\|ref\|ZP_02230923.1\| carbon storage regulator [Yersinia pestis biovar Antiqua str. E19790... CSRA_PHOLL - Carbon storage regulator homolog OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CI... gi\|45435095, gi\|... - gi\|45440239\|ref\|NP_991778.1\| carbon storage regulator [Yersinia pestis biovar Microtus str. 91001], ... gi\|21957618, gi\|... - gi\|22124794\|ref\|NP_668217.1\| carbon storage regulator [Yersinia pestis KIM], gi\|21957618\|gb\|AAM84468... gi\|15981234, gi\|... - gi\|218930325\|ref\|YP_002348200.1\| carbon storage regulator [Yersinia pestis CO92], gi\|16123457\|ref\|NP... CSRA_YERPS - Carbon storage regulator homolog OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=csrA ... gi\|77976226 - gi\|77976226\|ref\|ZP_00831737.1\| COG1551: Carbon storage regulator (could also regulate swarming and q... gi\|238725283, gi... - gi\|77975907\|ref\|ZP_00831440.1\| COG1551: Carbon storage regulator (could also regulate swarming and q... gi\|77961319 - gi\|77961319\|ref\|ZP_00825159.1\| COG1551: Carbon storage regulator (could also regulate swarming and q... gi\|77958680 - gi\|77958680\|ref\|ZP_00822709.1\| COG1551: Carbon storage regulator (could also regulate swarming and q... gi\|77632996 - gi\|77632996\|ref\|ZP_00795155.1\| COG1551: Carbon storage regulator (could also regulate swarming and q... gi\|166212971, gi... - gi\|166212971\|ref\|ZP_02239006.1\| carbon storage regulator [Yersinia pestis biovar Antiqua str. B42003... CSRA_YERE8 - Carbon storage regulator homolog OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 1... gi\|167051945, gi... - gi\|167399441\|ref\|ZP_02304965.1\| carbon storage regulator [Yersinia pestis biovar Antiqua str. UG05-0... gi\|167421668, gi... - gi\|167421668\|ref\|ZP_02313421.1\| carbon storage regulator [Yersinia pestis biovar Orientalis str. MG0... gi\|167057770, gi... - gi\|167423600\|ref\|ZP_02315353.1\| carbon storage regulator [Yersinia pestis biovar Mediaevalis str. K1... CSRA_YERPY - Carbon storage regulator homolog OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=csrA ... CSRA_YERPB - Carbon storage regulator homolog OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=csrA P... gi\|153997649, gi... - gi\|153997649\|ref\|ZP_02022749.1\| carbon storage regulator [Yersinia pestis CA88-4125], gi\|149289286\|g... CSRA_YERPP - Carbon storage regulator homolog OS=Yersinia pestis (strain Pestoides F) GN=csrA PE=3 SV=1 CSRA_YERPS - Carbon storage regulator homolog OS=Yersinia pseudotuberculosis GN=csrA PE=3 SV=1 CSRA_YERP3 - Carbon storage regulator homolog OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=c... gi\|229838924, gi... - gi\|229838924\|ref\|ZP_04459083.1\| post transcriptional regulatory RNA-binding protein [Yersinia pestis... gi\|229896405, gi... - gi\|229896405\|ref\|ZP_04511573.1\| post transcriptional regulatory RNA-binding protein [Yersinia pestis... gi\|229899491, gi... - gi\|229899491\|ref\|ZP_04514632.1\| post transcriptional regulatory RNA-binding protein [Yersinia pestis... gi\|238753176, gi... - gi\|238753176\|ref\|ZP_04614618.1\| Carbon storage regulator [Yersinia rohdei ATCC 43380], gi\|238708603\|... gi\|238705507, gi... - gi\|238756252\|ref\|ZP_04617568.1\| Carbon storage regulator [Yersinia ruckeri ATCC 29473], gi\|238705507... gi\|238758258, gi... - gi\|238758258\|ref\|ZP_04619437.1\| Carbon storage regulator [Yersinia aldovae ATCC 35236], gi\|238703588... gi\|238700250, gi... - gi\|238761736\|ref\|ZP_04622711.1\| Carbon storage regulator [Yersinia kristensenii ATCC 33638], gi\|2387... gi\|253990684, gi... - gi\|253990684\|ref\|YP_003042040.1\| Carbon storage regulator [Photorhabdus asymbiotica], gi\|253782134\|e... gi\|165915256, gi... - gi\|89105928\|ref\|ZP_01178440.1\| COG1551: Carbon storage regulator (could also regulate swarming and q... CSRA_YERPE - Carbon storage regulator homolog OS=Yersinia pestis GN=csrA PE=3 SV=1 CSRA_YERPN - Carbon storage regulator homolog OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=csrA PE=3 SV=1 CSRA_PHOLL - Carbon storage regulator homolog OS=Photorhabdus luminescens subsp. laumondii GN=csrA PE=3 SV=1	96.0	[0..1]	[61..1]
gi\|227161929, gi... - gi\|227357819\|ref\|ZP_03842167.1\| carbon storage regulator [Proteus mirabilis ATCC 29906], gi\|22716192... CSRA_PROMI - Carbon storage regulator homolog OS=Proteus mirabilis GN=csrA PE=3 SV=1 CSRA_PROMH - Carbon storage regulator homolog OS=Proteus mirabilis (strain HI4320) GN=csrA PE=3 SV=1 gi\|226328740, gi... - gi\|226328740\|ref\|ZP_03804258.1\| hypothetical protein PROPEN_02640 [Proteus penneri ATCC 35198], gi\|2...	96.0	[0..1]	[59..1]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILTRRVGE TLMIGDEVTV TVLGVKGNQV RIGVNAPKEV SVHREEIYQR IQAEKSQQSS  60
   61 Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.30103
Match:	2btiA
Description:	Structure-function studies of the RmsA CsrA post-transcriptional global regulator protein family reveals a class of RNA-binding structure
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits