YRC Public Data Repository - Protein Structure Prediction

Protein:	CSGF_ECOLI
Organism:	Escherichia coli
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSGF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|166859956, gi... - gi\|21552995\|gb\|AAM62419.1\|AF515666_5 CsmF [Pseudomonas putida GB-1], gi\|167033468\|ref\|YP_001668699.1...	167.0	[0..2]	[131..4]
gi\|113969213, gi... - gi\|82495031\|ref\|ZP_00880609.1\| curli production assembly/transport component CsgF, putative [Shewane...	161.0	[0..1]	[131..1]
gi\|78688742, gi\|... - gi\|78688742\|ref\|ZP_00853409.1\| curli production assembly/transport component CsgF, putative [Shewane... gi\|117614024, gi... - gi\|78684722\|ref\|ZP_00849505.1\| curli production assembly/transport component CsgF, putative [Shewane...	160.0	[0..1]	[131..1]
gi\|48731747, gi\|... - gi\|77458219\|ref\|YP_347724.1\| curli fiber protein CsgF, putative [Pseudomonas fluorescens Pf0-1], gi\|...	159.0	[0..7]	[131..17]
gi\|81240454, gi\|... - gi\|82776306\|ref\|YP_402655.1\| curli assembly protein CsgF [Shigella dysenteriae Sd197], gi\|81240454\|g...	158.0	[0..1]	[138..1]
gi\|82717355, gi\|... - gi\|82735722\|ref\|ZP_00898584.1\| curli fiber protein CsgF, putative [Pseudomonas putida F1], gi\|827173... gi\|24985126, gi\|... - gi\|26990185\|ref\|NP_745610.1\| curli fiber protein CsgF, putative [Pseudomonas putida KT2440], gi\|2498... tr\|I7C734\|I7C734... - Curli production assembly/transport component CsgF OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_162...	157.0	[0..18]	[131..21]
gi\|15801155, gi\|... - gi\|15801155\|ref\|NP_287172.1\| curli assembly protein CsgF [Escherichia coli O157:H7 EDL933], gi\|12514... gi\|25358830 - gi\|25358830\|pir\|\|D85665 hypothetical protein csgF [imported] - Escherichia coli (strain O157:H7, su...	156.0	[0..1]	[138..1]
gi\|104781913, gi... - gi\|95110900\|emb\|CAK15616.1\| putative Curli production assembly/transport component CsgF precursor [P... gi\|95110900 - gi\|95110900\|emb\|CAK15616.1\| putative Curli production assembly/transport component CsgF precursor [P...	156.0	[0..17]	[131..22]
CSGF_SALTI - Curli production assembly/transport component csgF OS=Salmonella typhi GN=csgF PE=3 SV=1 CSGF_SALTI - Curli production assembly/transport component CsgF OS=Salmonella typhi GN=csgF PE=3 SV=1 gi\|194409909, gi... - gi\|194451605\|ref\|YP_002045138.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica se... gi\|194472782, gi... - gi\|194472782\|ref\|ZP_03078766.1\| curli production assembly/transport component CsgF [Salmonella enter... gi\|194735787, gi... - gi\|194735787\|ref\|YP_002114137.1\| curli production assembly/transport component CsgF [Salmonella ente... gi\|197214137, gi... - gi\|197250434\|ref\|YP_002146905.1\| curli production assembly/transport component CsgF [Salmonella ente... gi\|168264078, gi... - gi\|205347356\|gb\|EDZ33987.1\| curli production assembly/transport component CsgF [Salmonella enterica ... gi\|168467081, gi... - gi\|195630402\|gb\|EDX49028.1\| curli production assembly/transport component CsgF [Salmonella enterica ... gi\|168822572, gi... - gi\|205341013\|gb\|EDZ27777.1\| curli production assembly/transport component CsgF [Salmonella enterica ... CSGF_SALTY - Curli production assembly/transport component CsgF OS=Salmonella typhimurium GN=csgF PE=4 SV=1 gi\|194404613, gi... - gi\|194445950\|ref\|YP_002040393.1\| curli production assembly/transport component CsgF [Salmonella ente... gi\|167993994, gi... - gi\|205328021\|gb\|EDZ14785.1\| curli production assembly/transport component CsgF [Salmonella enterica ... gi\|205331945, gi... - gi\|205331945\|gb\|EDZ18709.1\| curli production assembly/transport component CsgF [Salmonella enterica ... gi\|168237215, gi... - gi\|197289875\|gb\|EDY29236.1\| curli production assembly/transport component CsgF [Salmonella enterica ... gi\|205336419, gi... - gi\|205336419\|gb\|EDZ23183.1\| curli production assembly/transport component CsgF [Salmonella enterica ... gi\|238911040 - gi\|238911040\|ref\|ZP_04654877.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica ser... gi\|167553082, gi... - gi\|205322446\|gb\|EDZ10285.1\| curli production assembly/transport component CsgF [Salmonella enterica ... gi\|213976275 - gi\|213976275\|ref\|ZP_03403534.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica ser... gi\|214002382 - gi\|214002382\|ref\|ZP_03413117.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=csgF] [protein=curli assembly protein CsgF] [protein_id=YP_005236888.1] [location=complement(1... gi\|213581808 - gi\|213581808\|ref\|ZP_03363634.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica ser... gi\|213618650 - gi\|213618650\|ref\|ZP_03372476.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica ser... gi\|213646856 - gi\|213646856\|ref\|ZP_03376909.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica ser... gi\|213864883 - gi\|213864883\|ref\|ZP_03387002.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica ser... gi\|206709155, gi... - gi\|207857352\|ref\|YP_002244003.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica se... gi\|213023705 - gi\|213023705\|ref\|ZP_03338152.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica ser... gi\|213420224 - gi\|213420224\|ref\|ZP_03353290.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica ser... gi\|213427739 - gi\|213427739\|ref\|ZP_03360489.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica ser... gi\|197244155, gi... - gi\|197265900\|ref\|ZP_03165974.1\| curli production assembly/transport component CsgF [Salmonella enter... gi\|198245090, gi... - gi\|198245090\|ref\|YP_002215998.1\| curli production assembly/transport component CsgF [Salmonella ente... gi\|199602065, gi... - gi\|200389620\|ref\|ZP_03216231.1\| curli production assembly/transport component CsgF [Salmonella enter... gi\|204320294, gi... - gi\|204930835\|ref\|ZP_03221708.1\| curli production assembly/transport component CsgF [Salmonella enter... gi\|16760017 - gi\|16760017\|ref\|NP_455634.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica serova... CSGF_SALTY - Curli production assembly/transport component CsgF OS=Salmonella typhimurium (strain LT2 / SGSC1412 ... gi\|62179658, gi\|... - gi\|62179658\|ref\|YP_216075.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica serova... gi\|29142212, gi\|... - gi\|29142212\|ref\|NP_805554.1\| curli assembly protein CsgF [Salmonella enterica subsp. enterica serova... CSGF_SALTY - Curli production assembly/transport component csgF OS=Salmonella typhimurium GN=csgF PE=4 SV=1	156.0	[0..1]	[138..1]
gi\|146294075, gi... - gi\|77813145\|ref\|ZP_00812426.1\| curli production assembly/transport component CsgF, putative [Shewane...	156.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVKHAVVLL MLISPLSWAG TMTFQFRNPN FGGNPNNGAF LLNSAQAQNS YKDPSYNDDF  60
   61 GIETPSALDN FTQAIQSQIL GGLLSNINTG KPGRMVTNDY IVDIANRDGQ LQLNVTDRKT 120
  121 GQTSTIQVSG LQNNSTDF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits