YRC Public Data Repository - Protein Structure Prediction

Protein:	CSGA_ECOLI
Organism:	Escherichia coli
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSGA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218557923, gi... - gi\|218557923\|ref\|YP_002390836.1\| cryptic curlin major subunit [Escherichia coli S88], gi\|218364692\|e... gi\|218704450, gi... - gi\|218704450\|ref\|YP_002411969.1\| cryptic curlin major subunit [Escherichia coli UMN026], gi\|21843154... gi\|117623231, gi... - gi\|117623231\|ref\|YP_852144.1\| cryptic curlin major subunit [Escherichia coli APEC O1], gi\|115512355\|... gi\|91210192, gi\|... - gi\|91210192\|ref\|YP_540178.1\| cryptic curlin major subunit [Escherichia coli UTI89], gi\|91071766\|gb\|A... gi\|170517600, gi... - gi\|170679882\|ref\|YP_001744141.1\| major curlin protein CsgA [Escherichia coli SMS-3-5], gi\|170517600\|... gi\|215486252, gi... - gi\|215486252\|ref\|YP_002328683.1\| cryptic curlin major subunit [Escherichia coli O127:H6 str. E2348/6... gi\|237706975, gi... - gi\|237706975\|ref\|ZP_04537456.1\| curlin major subunit CsgA [Escherichia sp. 3_2_53FAA], gi\|226898185\|...	109.0	[0..1]	[151..1]
gi\|290425 - gi\|290425\|gb\|AAA23616.1\| curlin subunit gi\|290425 - gi\|290425\|gb\|AAA23616.1\| curlin subunit	107.0	[0..1]	[151..1]
gi\|214002378 - gi\|214002378\|ref\|ZP_03413113.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica se... gi\|213648863 - gi\|213648863\|ref\|ZP_03378916.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica se... gi\|213620760 - gi\|213620760\|ref\|ZP_03373543.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica se... gi\|213581825 - gi\|213581825\|ref\|ZP_03363651.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica se... gi\|224468878, gi... - gi\|224584351\|ref\|YP_002638149.1\| major curlin subunit precursor [Salmonella enterica subsp. enterica... gi\|204930721, gi... - gi\|204930721\|ref\|ZP_03221594.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Ja... gi\|200390192, gi... - gi\|200390192\|ref\|ZP_03216803.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Vi... gi\|197937125, gi... - gi\|198242609\|ref\|YP_002215994.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar D... CSGA_SALTI - Major curlin subunit OS=Salmonella typhi GN=csgA PE=3 SV=1 gi\|197362791, gi... - gi\|197362791\|ref\|YP_002142428.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica s... CSGA_SALEN - Major curlin subunit OS=Salmonella enteritidis GN=csgA PE=1 SV=1 gi\|213427735 - gi\|213427735\|ref\|ZP_03360485.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica se... CSGA_SALTY - Major curlin subunit OS=Salmonella typhimurium GN=csgA PE=3 SV=1 gi\|213162399 - gi\|213162399\|ref\|ZP_03348109.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica se... gi\|238911036 - gi\|238911036\|ref\|ZP_04654873.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica se... gi\|213027950 - gi\|213027950\|ref\|ZP_03342397.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica se... gi\|206709151, gi... - gi\|207857348\|ref\|YP_002243999.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica s... CSGA_SALEN - Major curlin subunit OS=Salmonella enteritidis GN=csgA PE=1 SV=1 lcl\|NC_016856.1_... - [gene=csgA] [protein=cryptic curlin major subunit] [protein_id=YP_005236894.1] [location=1189792..11... CSGA_SALTI - Major curlin subunit OS=Salmonella typhi GN=csgA PE=3 SV=1 CSGA_SALTY - Major curlin subunit OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=csgA PE=3 SV... gi\|29142208, gi\|... - gi\|29142208\|ref\|NP_805550.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica serov... gi\|16760021 - gi\|16760021\|ref\|NP_455638.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica serov... gi\|194448884, gi... - gi\|194448884\|ref\|YP_002045142.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica s... gi\|194402445, gi... - gi\|194443782\|ref\|YP_002040397.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar N... gi\|205341009, gi... - gi\|205341009\|gb\|EDZ27773.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Weltev... gi\|168467089, gi... - gi\|195630403\|gb\|EDX49029.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Newpor... gi\|197261894, gi... - gi\|197261894\|ref\|ZP_03161968.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Sa... gi\|197248411, gi... - gi\|197248411\|ref\|YP_002146901.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar A... gi\|194736345, gi... - gi\|194736345\|ref\|YP_002114141.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar S... gi\|194456806, gi... - gi\|194470442\|ref\|ZP_03076426.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Ke... gi\|205328043, gi... - gi\|205328043\|gb\|EDZ14807.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|205322432, gi... - gi\|205322432\|gb\|EDZ10271.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Saintp... gi\|161614638, gi... - gi\|161614638\|ref\|YP_001588603.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica s... gi\|168264070, gi... - gi\|205347392\|gb\|EDZ34023.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Hadar ... gi\|168244737, gi... - gi\|205336401\|gb\|EDZ23165.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Heidel... gi\|62127295, gi\|... - gi\|62179662\|ref\|YP_216079.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica serov... gi\|197289834, gi... - gi\|197289834\|gb\|EDY29195.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Schwar... CSGA_SALTY - Major curlin subunit OS=Salmonella typhimurium GN=csgA PE=3 SV=1 gi\|56413868, gi\|... - gi\|56413868\|ref\|YP_150943.1\| cryptic curlin major subunit [Salmonella enterica subsp. enterica serov... gi\|205331941, gi... - gi\|205331941\|gb\|EDZ18705.1\| major curlin subunit [Salmonella enterica subsp. enterica serovar Kentuc...	107.0	[0..1]	[151..1]
gi\|189358157, gi... - gi\|189358157\|gb\|EDU76576.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|189363267, gi... - gi\|189363267\|gb\|EDU81686.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|189368670, gi... - gi\|189368670\|gb\|EDU87086.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|254792426, gi... - gi\|254792426\|ref\|YP_003077263.1\| cryptic curlin major subunit [Escherichia coli O157:H7 str. TW14359... gi\|171986607, gi... - pir\|\|H85665 hypothetical protein csgA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12514574, gi\|... - gi\|15801159\|ref\|NP_287176.1\| cryptic curlin major subunit [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|217318875, gi... - gi\|217328448\|ref\|ZP_03444530.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. TW14588], g... gi\|209399619, gi... - gi\|209399619\|ref\|YP_002269890.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4115], g... gi\|208728136, gi... - gi\|208808335\|ref\|ZP_03250672.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4206], gi... gi\|195935431 - gi\|195935431\|ref\|ZP_03080813.1\| cryptic curlin major subunit [Escherichia coli O157:H7 str. EC4024] CSGA_ECO57 - Major curlin subunit OS=Escherichia coli O157:H7 GN=csgA PE=3 SV=1 gi\|208822241, gi... - gi\|208822241\|ref\|ZP_03262560.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4042], gi... gi\|13360880, gi\|... - gi\|15830674\|ref\|NP_309447.1\| cryptic curlin major subunit [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208815166, gi... - gi\|208815166\|ref\|ZP_03256345.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4045], gi... gi\|168783569, gi... - gi\|188999078\|gb\|EDU68064.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|168773884, gi... - gi\|187770403\|gb\|EDU34247.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|189378334, gi... - gi\|189378334\|gb\|EDU96750.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC508], gi\|1687... gi\|189370503, gi... - gi\|189370503\|gb\|EDU88919.1\| major curlin protein CsgA [Escherichia coli O157:H7 str. EC869], gi\|1687...	106.0	[0..1]	[151..1]
gi\|73855072, gi\|... - gi\|74311595\|ref\|YP_310014.1\| cryptic curlin major subunit [Shigella sonnei Ss046], gi\|73855072\|gb\|AA...	105.0	[0..1]	[151..1]
gi\|110641219, gi... - gi\|110641219\|ref\|YP_668949.1\| cryptic curlin major subunit [Escherichia coli 536], gi\|110342811\|gb\|A... gi\|218426559, gi... - gi\|218688995\|ref\|YP_002397207.1\| cryptic curlin major subunit [Escherichia coli ED1a], gi\|218426559\|... gi\|190907313, gi... - gi\|75240641\|ref\|ZP_00724558.1\| COG5651: PPE-repeat proteins [Escherichia coli F11], gi\|191172429\|ref... gi\|227836806, gi... - gi\|227886602\|ref\|ZP_04004407.1\| cryptic curlin major subunit [Escherichia coli 83972], gi\|227836806\|...	104.0	[0..1]	[151..1]
gi\|2275121 - gi\|2275121\|emb\|CAA04151.1\| AgfA protein [Salmonella typhimurium] gi\|2275121\|emb\|C... - AgfA protein [Salmonella typhimurium]	104.0	[0..1]	[151..1]
gi\|26247179, gi\|... - gi\|26247179\|ref\|NP_753219.1\| cryptic curlin major subunit [Escherichia coli CFT073], gi\|26107580\|gb\|...	102.0	[0..1]	[151..1]
gi\|31790498 - gi\|31790498\|emb\|CAD56675.1\| curlin-csgA protein [Citrobacter freundii]	101.0	[0..1]	[151..1]
gi\|31790494 - gi\|31790494\|emb\|CAD56672.1\| curlin-csgA protein [Citrobacter sp. Fec2]	96.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLKVAAIA AIVFSGSALA GVVPQYGGGG NHGGGGNNSG PNSELNIYQY GGGNSALALQ  60
   61 TDARNSDLTI TQHGGGNGAD VGQGSDDSSI DLTQRGFGNS ATLDQWNGKN SEMTVKQFGG 120
  121 GNGAAVDQTA SNSSVNVTQV GFGNNATAHQ Y

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	1awcB
Description:	GA bindinig protein (GABP) beta 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits