YRC Public Data Repository - Protein Structure Prediction

Protein:	CPXR_ECOLI
Organism:	Escherichia coli
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPXR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	251.0	[0..2]	[231..12]
gi\|28269835, gi\|... - gi\|28377004\|ref\|NP_783896.1\| response regulator [Lactobacillus plantarum WCFS1], gi\|28269835\|emb\|CAD...	251.0	[0..1]	[231..1]
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	250.0	[0..2]	[229..105]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	250.0	[0..3]	[231..4]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	250.0	[0..1]	[230..4]
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	249.0	[0..2]	[231..4]
gi\|56381851, gi\|... - gi\|56422009\|ref\|YP_149327.1\| two-component response regulator [Geobacillus kaustophilus HTA426], gi\|...	249.0	[0..2]	[231..3]
gi\|133733813, gi... - gi\|254937894\|ref\|ZP_05269591.1\| hypothetical protein LmonF6_12229 [Listeria monocytogenes F6900], gi... gi\|255026056 - gi\|255026056\|ref\|ZP_05298042.1\| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL J... gi\|255029993 - gi\|255029993\|ref\|ZP_05301944.1\| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28] gi\|16802333 - gi\|16802333\|ref\|NP_463818.1\| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e] gi\|25300996, gi\|... - pir\|\|AH1110 two-component response regulator homolog lmo0287 [imported] - Listeria monocytogenes (st... gi\|224502419 - gi\|224502419\|ref\|ZP_03670726.1\| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL R2-561... gi\|47096376, gi\|... - gi\|47096376\|ref\|ZP_00233971.1\| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F685... gi\|126941623, gi... - gi\|254900524\|ref\|ZP_05260448.1\| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161], gi\|... gi\|224498864 - gi\|224498864\|ref\|ZP_03667213.1\| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland 19... gi\|153189546, gi... - gi\|254913525\|ref\|ZP_05263537.1\| hypothetical protein LmonJ2_12039 [Listeria monocytogenes J2818], gi... gi\|254828747, gi... - gi\|254828747\|ref\|ZP_05233434.1\| hypothetical protein LmonocytogeFSL_09841 [Listeria monocytogenes FS...	249.0	[0..2]	[231..4]
gi\|89084904, gi\|... - gi\|89100385\|ref\|ZP_01173249.1\| PhoP [Bacillus sp. NRRL B-14911], gi\|89084904\|gb\|EAR64041.1\| PhoP [Ba...	248.0	[0..2]	[231..3]

Back

Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKILLVDDD RELTSLLKEL LEMEGFNVIV AHDGEQALDL LDDSIDLLLL DVMMPKKNGI  60
   61 DTLKALRQTH QTPVIMLTAR GSELDRVLGL ELGADDYLPK PFNDRELVAR IRAILRRSHW 120
  121 SEQQQNNDNG SPTLEVDALV LNPGRQEASF DGQTLELTGT EFTLLYLLAQ HLGQVVSREH 180
  181 LSQEVLGKRL TPFDRAIDMH ISNLRRKLPD RKDGHPWFKT LRGRGYLMVS AS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits