YRC Public Data Repository - Protein Structure Prediction

Protein:	CPXP_ECOLI
Organism:	Escherichia coli
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPXP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83569820 - gi\|83569820\|ref\|ZP_00921269.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	101.0	[0..1]	[166..2]
gi\|83586242, gi\|... - gi\|83586242\|ref\|ZP_00924878.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	100.0	[0..1]	[151..2]
gi\|217322373, gi... - gi\|217326152\|ref\|ZP_03442236.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. TW14588], gi... gi\|254039130, gi... - gi\|254039130\|ref\|ZP_04873180.1\| periplasmic protein CpxP [Escherichia sp. 1_1_43], gi\|226838566\|gb\|E... gi\|227837722, gi... - gi\|227885346\|ref\|ZP_04003151.1\| periplasmic protein CpxP [Escherichia coli 83972], gi\|227837722\|gb\|E... gi\|189010231, gi... - gi\|189010231\|ref\|ZP_02805835.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|189403092, gi... - gi\|189403092\|ref\|ZP_02793220.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|189404026, gi... - gi\|189404026\|ref\|ZP_02786713.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|189373441, gi... - gi\|189404886\|ref\|ZP_02811774.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|191166404, gi... - gi\|191166404\|ref\|ZP_03028235.1\| periplasmic protein CpxP [Escherichia coli B7A], gi\|190903504\|gb\|EDV... gi\|192958584, gi... - gi\|193067964\|ref\|ZP_03048929.1\| periplasmic protein CpxP [Escherichia coli E110019], gi\|192958584\|gb... gi\|208808100, gi... - gi\|208808100\|ref\|ZP_03250437.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|208813683, gi... - gi\|208813683\|ref\|ZP_03255012.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|15804503, gi\|... - gi\|15804503\|ref\|NP_290543.1\| hypothetical protein Z5458 [Escherichia coli O157:H7 EDL933], gi\|125188... gi\|13364315, gi\|... - gi\|15834093\|ref\|NP_312866.1\| hypothetical protein ECs4839 [Escherichia coli O157:H7], gi\|13364315\|db... gi\|26250679, gi\|... - gi\|26250679\|ref\|NP_756719.1\| hypothetical protein c4865 [Escherichia coli CFT073], gi\|26111110\|gb\|AA... gi\|24115209, gi\|... - ref\|NP_709719.1\| yiiO gene product [Shigella flexneri 2a str. 301], gb\|AAN45426.1\| yiiO gene produc... gi\|209752420, gi... - gi\|305017\|gb\|AAB03046.1\| ORF_o167 [Escherichia coli], pir\|\|G91233 hypothetical protein ECs4839 [impo... gi\|74314414, gi\|... - gi\|74314414\|ref\|YP_312833.1\| Uncharacterized periplasmic protein [Shigella sonnei Ss046], gi\|7385789... gi\|81243067, gi\|... - gi\|82778919\|ref\|YP_405268.1\| Uncharacterized periplasmic protein [Shigella dysenteriae Sd197], gi\|81... gi\|75258103 - gi\|75258103\|ref\|ZP_00729564.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|75513936 - gi\|75513936\|ref\|ZP_00736289.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|81247674, gi\|... - gi\|82546263\|ref\|YP_410210.1\| Uncharacterized periplasmic protein [Shigella boydii Sb227], gi\|8124767... gi\|13364315, gi\|... - gi\|15834093\|ref\|NP_312866.1\| hypothetical protein ECs4839 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|194414516, gi... - gi\|75211272\|ref\|ZP_00711371.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|168748792, gi... - gi\|188016777\|gb\|EDU54899.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|305017\|gb\|AAB... - ORF_o167 [Escherichia coli] gi\|189357120, gi... - gi\|189357120\|gb\|EDU75539.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|187769156, gi... - gi\|187769156\|gb\|EDU33000.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189378067, gi... - gi\|189378067\|gb\|EDU96483.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|170682865, gi... - gi\|170682865\|ref\|YP_001746251.1\| periplasmic protein CpxP [Escherichia coli SMS-3-5], gi\|170520583\|g...	100.0	[0..1]	[151..2]
gi\|25380129 - pir\|\|AC0010 probable exported protein cpxP [imported] - Yersinia pestis (strain CO92) gi\|162420508, gi... - gi\|77633895\|ref\|ZP_00796008.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|229904465, gi... - gi\|229904465\|ref\|ZP_04519576.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|149290271, gi... - gi\|150260863\|ref\|ZP_01917591.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149290271\|... gi\|153950411, gi... - gi\|77630849\|ref\|ZP_00793435.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|22123987, gi\|... - gi\|22123987\|ref\|NP_667410.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis KIM], gi\|21956... gi\|27544275 - gi\|27544275\|dbj\|BAC54910.1\| hypothetical protein [Yersinia pseudotuberculosis] gi\|229706636, gi... - gi\|229836188\|ref\|ZP_04456356.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|218927294, gi... - gi\|218927294\|ref\|YP_002345169.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis CO92], gi\|... gi\|229839924, gi... - gi\|229839924\|ref\|ZP_04460083.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|45439939, gi\|... - gi\|45439939\|ref\|NP_991478.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis biovar Microtu... gi\|229842006, gi... - gi\|229842006\|ref\|ZP_04462161.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|165936156, gi... - gi\|89103446\|ref\|ZP_01176023.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|108809459, gi... - gi\|108809459\|ref\|YP_653375.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis Antiqua], gi\|... gi\|165989621, gi... - gi\|166011475\|ref\|ZP_02232373.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165926138, gi... - gi\|165926138\|ref\|ZP_02221970.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167398953, gi... - gi\|167398953\|ref\|ZP_02304477.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166213737, gi... - gi\|166213737\|ref\|ZP_02239772.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167054373, gi... - gi\|167426684\|ref\|ZP_02318437.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167419212, gi... - gi\|167419212\|ref\|ZP_02310965.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|170026338, gi... - gi\|170026338\|ref\|YP_001722843.1\| periplasmic stress adaptor protein CpxP [Yersinia pseudotuberculosi... gi\|167468393 - gi\|167468393\|ref\|ZP_02333097.1\| hypothetical protein YpesF_10944 [Yersinia pestis FV-1]	100.0	[0..1]	[156..1]
gi\|82776812, gi\|... - gi\|82776812\|ref\|YP_403161.1\| periplasmic protein [Shigella dysenteriae Sd197], gi\|81240960\|gb\|ABB616...	100.0	[0..1]	[155..1]
gi\|75240307 - gi\|75240307\|ref\|ZP_00724247.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|110345842, gi... - gi\|110644250\|ref\|YP_671980.1\| periplasmic repressor CpxP [Escherichia coli 536], gi\|110345842\|gb\|ABG...	99.0	[0..1]	[151..1]
Q66GB1\|Q66GB1_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|51587711, gi\|... - gi\|51594429\|ref\|YP_068620.1\| periplasmic stress adaptor protein CpxP [Yersinia pseudotuberculosis IP... gi\|186893416, gi... - gi\|186893416\|ref\|YP_001870528.1\| periplasmic stress adaptor protein CpxP [Yersinia pseudotuberculosi...	99.0	[0..1]	[156..1]
gi\|226902882, gi... - gi\|237702945\|ref\|ZP_04533426.1\| periplasmic repressor CpxP [Escherichia sp. 3_2_53FAA], gi\|226902882... gi\|91213454, gi\|... - gi\|91213454\|ref\|YP_543440.1\| hypothetical protein UTI89_C4497 [Escherichia coli UTI89], gi\|91075028\|... gi\|115515305, gi... - gi\|117626181\|ref\|YP_859504.1\| periplasmic repressor CpxP [Escherichia coli APEC O1], gi\|115515305\|gb...	99.0	[0..1]	[151..2]

Back

Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIVTAAVMA STLAVSSLSH AAEVGSGDNW HPGEELTQRS TQSHMFDGIS LTEHQRQQMR  60
   61 DLMQQARHEQ PPVNVSELET MHRLVTAENF DENAVRAQAE KMANEQIARQ VEMAKVRNQM 120
  121 YRLLTPEQQA VLNEKHQQRM EQLRDVTQWQ KSSSLKLLSS SNSRSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits