YRC Public Data Repository - Protein Structure Prediction

Protein:	COX6A_CYPCA
Organism:	Cyprinus carpio
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX6A_CYPCA.

Description	E-value	Query Range	Subject Range
gi\|182891396, gi... - gi\|68357762\|ref\|XP_698045.1\| PREDICTED: hypothetical protein [Danio rerio], gi\|52219190\|ref\|NP_00100...	157.0	[0..1]	[102..1]
gi\|47217580 - gi\|47217580\|emb\|CAG02507.1\| unnamed protein product [Tetraodon nigroviridis]	155.0	[0..3]	[99..12]
gi\|171847245, gi... - gi\|89271881\|emb\|CAJ83526.1\| cytochrome c oxidase subunit VIa polypeptide 1 [Xenopus tropicalis], gi\|...	154.0	[0..10]	[102..19]
gi\|6138950 - gi\|6138950\|gb\|AAF04404.1\|AF051370_1 cytochrome c oxidase subunit VIa precursor [Thunnus obesus]	153.0	[0..3]	[102..1]
COX6A1 - cytochrome c oxidase subunit VIa polypeptide 1 gi\|123999658, gi... - gi\|123999658\|gb\|ABM87370.1\| cytochrome c oxidase subunit VIa polypeptide 1 [synthetic construct], gi... gi\|114647282 - gi\|114647282\|ref\|XP_001160455.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-...	152.0	[0..12]	[100..22]
gi\|76638499 - gi\|76638499\|ref\|XP_587918.2\| PREDICTED: similar to cytochrome c oxidase subunit VIa polypeptide 1 pr...	152.0	[0..6]	[100..32]
gi\|148222617, gi... - gi\|71051873\|gb\|AAH99297.1\| MGC116489 protein [Xenopus laevis], gi\|148222617\|ref\|NP_001089622.1\| hypo...	151.0	[0..10]	[102..19]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSPAATVA RRRLAAASQG SHEGGARTWK ILSFVLALPG VGVCMANAYM KMQAHSHDPP  60
   61 EFVPYPHLRI RTKPWPWGDG NHSLFHNAHT NALPTGYEGP HH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.221849
Match:	1v54G
Description:	Bovine heart cytochrome c oxidase at the fully oxidized state
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	0.43268723383487	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	0.43268723383487	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	0.43268723383487	bayes_pls_golite062009
heme-copper terminal oxidase activity	0.280428750542101	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.13082545919054	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.04800265254548	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: