YRC Public Data Repository - Protein Structure Prediction

Protein:	CODB_ECOLI
Organism:	Escherichia coli
Length:	419 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CODB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|42552670, gi\|... - gi\|46121799\|ref\|XP_385453.1\| hypothetical protein FG05277.1 [Gibberella zeae PH-1], gi\|42552670\|gb\|E...	259.0	[0..4]	[405..29]
gi\|50285469, gi\|... - gi\|50285469\|ref\|XP_445163.1\| unnamed protein product [Candida glabrata], gi\|49524466\|emb\|CAG58063.1\|... gi\|49524466 - gi\|49524466\|emb\|CAG58063.1\| unnamed protein product [Candida glabrata]	253.0	[0..2]	[409..121]
gi\|190408808 - gi\|190408808\|gb\|EDV12073.1\| uracil permease [Saccharomyces cerevisiae RM11-1a] gi\|207347785 - gi\|207347785\|gb\|EDZ73852.1\| YBR021Wp-like protein [Saccharomyces cerevisiae AWRI1631] FUR4 - Uracil permease, localized to the plasma membrane; expression is tightly regulated by uracil levels ... gi\|151946414 - gi\|151946414\|gb\|EDN64636.1\| uracil permease [Saccharomyces cerevisiae YJM789] FUR4_YEAST - Uracil permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUR4 PE=3 SV=2	251.0	[0..2]	[405..94]
gi\|52352511 - gi\|52352511\|gb\|AAU43748.1\| FUR4 [Saccharomyces kudriavzevii IFO 1802]	251.0	[0..2]	[405..94]
gi\|145019234, gi... - gi\|39945764\|ref\|XP_362419.1\| hypothetical protein MGG_08002 [Magnaporthe grisea 70-15], gb\|EAA57033....	247.0	[0..4]	[405..30]
gi\|49648319, gi\|... - gi\|50549957\|ref\|XP_502451.1\| YALI0D05621p [Yarrowia lipolytica], gi\|49648319\|emb\|CAG80639.1\| unnamed... gi\|49648319 - gi\|49648319\|emb\|CAG80639.1\| YALI0D05621p [Yarrowia lipolytica]	246.0	[0..2]	[405..61]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDNNFSQG PVPQSARKGV LALTFVMLGL TFFSASMWTG GTLGTGLSYH DFFLAVLIGN  60
   61 LLLGIYTSFL GYIGAKTGLT THLLARFSFG VKGSWLPSLL LGGTQVGWFG VGVAMFAIPV 120
  121 GKATG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDINLLIAVS GLLMTVTVFF GISALTVLSV IAVPAIACLG GYSVWLAVNG MGGLDALKAV  60
   61 VPAQPLDFNV ALALVVGSFI SAGTLTADFV RFGRNAKLAV LVAMVAFFLG NSLMFIFGAA 120
  121 GAAAL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [251-419]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMADISDVMI AQGLLLPAIV VLGLNIWTTN DNALYASGLG FANITGMSSK TLSVINGIIG  60
   61 TVCALWLYNN FVGWLTFLSA AIPPVGGVII ADYLMNRRRY EHFATTRMMS VNWVAILAVA 120
  121 LGIAAGHWLP GIVPVNAVLG GALSYLILNP ILNRKTTAAM THVEANSVE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits