YRC Public Data Repository - Protein Structure Prediction

Protein:	COAE_PASMU
Organism:	Pasteurella multocida
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COAE_PASMU.

Description	E-value	Query Range	Subject Range
gi\|229845942, gi... - gi\|229845942\|ref\|ZP_04466054.1\| dephospho-CoA kinase [Haemophilus influenzae 7P49H1], gi\|229810946\|g... gi\|46129141 - gi\|46129141\|ref\|ZP_00155820.2\| COG0237: Dephospho-CoA kinase [Haemophilus influenzae R2846]	195.0	[0..1]	[205..17]
gi\|48868871, gi\|... - gi\|68249477\|ref\|YP_248589.1\| dephospho-CoA kinase [Haemophilus influenzae 86-028NP], gi\|68057676\|gb\|...	195.0	[0..1]	[206..5]
gi\|1074552 - gi\|1074552\|pir\|\|A64161 hypothetical protein HI0890 - Haemophilus influenzae (strain Rd KW20) gi\|1573909 - gi\|1573909\|gb\|AAC22550.1\| conserved hypothetical protein [Haemophilus influenzae Rd KW20]	194.0	[0..1]	[206..5]
gi\|150840012, gi... - gi\|75430206\|ref\|ZP_00732687.1\| Dephospho-CoA kinase [Actinobacillus succinogenes 130Z], gi\|74276641\|...	194.0	[0..1]	[205..11]
COAE_MANSM - Dephospho-CoA kinase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=coaE PE=3 SV=1	193.0	[0..1]	[206..1]
COAE_HAEIN - Dephospho-CoA kinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=coaE P... COAE_HAEIN - Dephospho-CoA kinase OS=Haemophilus influenzae GN=coaE PE=1 SV=2	193.0	[0..1]	[206..1]
gi\|46143865 - gi\|46143865\|ref\|ZP_00204584.1\| COG0237: Dephospho-CoA kinase [Actinobacillus pleuropneumoniae serova... gi\|126097144, gi... - gi\|126208352\|ref\|YP_001053577.1\| dephospho-CoA kinase [Actinobacillus pleuropneumoniae L20], gi\|1260...	192.0	[0..1]	[206..1]
COAE_AGGAC - Dephospho-CoA kinase OS=Aggregatibacter actinomycetemcomitans GN=coaE PE=3 SV=1	191.0	[0..1]	[202..1]
gi\|42631214 - gi\|42631214\|ref\|ZP_00156752.1\| COG0237: Dephospho-CoA kinase [Haemophilus influenzae R2866]	190.0	[0..1]	[206..5]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYIVGLTGG IGSGKSTIAH LFMALGVPVI DADVVARDIV TKGSELLSKI VDYFGEHILC  60
   61 ENGELNRAKL RERIFRHPED KVWLNQLLHP AIREEMLRQL QIQTYPYVLW VVPLLIENNL 120
  121 TAFCQRVLVV DVEPETQIQR AMQRDNNSIE LIQHIMASQV DRQTRLQFAD DVIQNDADLK 180
  181 GNLPVLKQKV LELHHQYLQL ANAQNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1jjvA
Description:	Dephospho-CoA kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009
dephospho-CoA kinase activity	0.656417599253142	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: