YRC Public Data Repository - Protein Structure Prediction

Protein:	CITT_ECOLI
Organism:	Escherichia coli
Length:	487 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CITT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115390913, gi... - gi\|115390913\|ref\|XP_001212961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	283.0	[0..11]	[483..925]
gi\|111063706, gi... - gi\|169608556\|ref\|XP_001797697.1\| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi\|11...	273.0	[0..3]	[483..469]
gi\|90304326, gi\|... - gi\|90304326\|gb\|EAS33957.1\| hypothetical protein CIMG_04981 [Coccidioides immitis RS], gi\|119189867\|r...	270.0	[0..3]	[480..584]
gi\|42548023, gi\|... - gi\|46116990\|ref\|XP_384513.1\| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi\|42548023\|gb\|E...	270.0	[0..3]	[447..484]
gi\|49076898, gi\|... - gi\|71021351\|ref\|XP_760906.1\| hypothetical protein UM04759.1 [Ustilago maydis 521], ref\|XP_402374.1\| ...	263.0	[0..2]	[483..544]
gi\|66847808, gi\|... - gi\|70990654\|ref\|XP_750176.1\| plasma membrane phosphate transporter Pho87 [Aspergillus fumigatus Af29...	262.0	[0..11]	[483..607]
gi\|85078865 - gi\|85078865\|ref\|XP_956243.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917298, gi\|... - gi\|32414999\|ref\|XP_327979.1\| hypothetical protein [Neurospora crassa], gi\|28917298\|gb\|EAA27007.1\| hy...	257.0	[0..3]	[466..537]
gi\|116199663, gi... - gi\|88179266\|gb\|EAQ86734.1\| hypothetical protein CHGG_07987 [Chaetomium globosum CBS 148.51], gi\|1161...	253.0	[0..12]	[484..506]
gi\|40747412, gi\|... - gi\|67516375\|ref\|XP_658073.1\| hypothetical protein AN0469.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	244.0	[0..32]	[484..672]
gi\|169771137 - gi\|169771137\|ref\|XP_001820038.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767897 - gi\|83767897\|dbj\|BAE58036.1\| unnamed protein product [Aspergillus oryzae]	242.0	[0..11]	[483..400]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAKDNIWK LLAPLVVMGV MFLIPVPDGM PPQAWHYFAV FVAMIVGMIL EPIPATAISF  60
   61 IAVTICVIGS NYLLFDAKEL ADPAFNAQKQ ALKWGLAGFS STTVWLVFGA FIFALGYEVS 120
  121 GLGRRIALFL VKFMGKRTLT LGYAIVIIDI LLAPFTPSNT ARTGGTVFPV IKNLPPLFKS 180
  181 FPN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [184-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPSARRIGGY LMWMMVISTS LSSSMFVTGA APNVLGLEFV SKIAGIQISW LQWFLCFLPV  60
   61 GVILLIIAPW LSYVLYK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [261-487]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEITHSEEVA TWAGDELKTM GALTRREWTL IGLVLLSLGL WVFGSEVINA TAVGLLAVSL  60
   61 MLALHVVPWK DITRYNSAWN TLVNLATLVV MANGLTRSGF IDWFAGTMST HLEGFSPNAT 120
  121 VIVLVLVFYF AHYLFASLSA HTATMLPVIL AVGKGIPGVP MEQLCILLVL SIGIMGCLTP 180
  181 YATGPGVIIY GCGYVKSKDY WRLGAIFGVI YISMLLLVGW PILAMWN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits