YRC Public Data Repository - Protein Structure Prediction

Protein:	CIRA_ECOLI
Organism:	Escherichia coli
Length:	663 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIRA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110642365, gi... - gi\|110642365\|ref\|YP_670095.1\| colicin I receptor [Escherichia coli 536], gi\|110343957\|gb\|ABG70194.1\|...	452.0	[0..1]	[663..1]
gi\|29136792, gi\|... - gi\|29141166\|ref\|NP_804508.1\| colicin I receptor [Salmonella enterica subsp. enterica serovar Typhi s... gi\|16761140 - gi\|16761140\|ref\|NP_456757.1\| colicin I receptor [Salmonella enterica subsp. enterica serovar Typhi s... gi\|16503438, gi\|... - gi\|25300749\|pir\|\|AG0782 colicin I receptor precursor [imported] - Salmonella enterica subsp. enteric...	452.0	[0..1]	[663..1]
gi\|26108943, gi\|... - gi\|26248538\|ref\|NP_754578.1\| colicin I receptor [Escherichia coli CFT073], gi\|26108943\|gb\|AAN81146.1... gi\|91211442, gi\|... - gi\|91211442\|ref\|YP_541428.1\| colicin I receptor [Escherichia coli UTI89], gi\|91073016\|gb\|ABE07897.1\|... gi\|115513480, gi... - gi\|117624356\|ref\|YP_853269.1\| colicin I receptor [Escherichia coli APEC O1], gi\|115513480\|gb\|ABJ0155... gi\|237704622, gi... - gi\|237704622\|ref\|ZP_04535103.1\| ferric iron-catecholate outer membrane transporter [Escherichia sp. ...	452.0	[0..1]	[663..28]
gi\|224583304, gi... - gi\|224583304\|ref\|YP_002637102.1\| colicin I receptor precursor [Salmonella enterica subsp. enterica s... gi\|197093296, gi... - gi\|197361820\|ref\|YP_002141456.1\| colicin I receptor [Salmonella enterica subsp. enterica serovar Par... gi\|62128418, gi\|... - gi\|62180785\|ref\|YP_217202.1\| colicin I receptor [Salmonella enterica subsp. enterica serovar Cholera... gi\|56412889, gi\|... - gi\|56412889\|ref\|YP_149964.1\| colicin I receptor [Salmonella enterica subsp. enterica serovar Paratyp...	451.0	[0..1]	[663..1]
lcl\|NC_016856.1_... - [gene=cirA] [protein=colicin I receptor] [protein_id=YP_005238252.1] [location=complement(2348105..2... gi\|16765529, gi\|... - gi\|16765529\|ref\|NP_461144.1\| colicin I receptor [Salmonella typhimurium LT2], gi\|16420737\|gb\|AAL2110...	451.0	[0..1]	[663..1]
gi\|73856154, gi\|... - gi\|74312677\|ref\|YP_311096.1\| colicin I receptor [Shigella sonnei Ss046], gi\|73856154\|gb\|AAZ88861.1\| ...	450.0	[0..1]	[663..1]
gi\|145544 - gi\|145544\|gb\|AAA75183.1\| colicin I receptor [Escherichia coli]	450.0	[0..1]	[663..1]
gi\|15832301, gi\|... - gi\|15832301\|ref\|NP_311074.1\| colicin I receptor precursor [Escherichia coli O157:H7], gi\|13362516\|db... gi\|208735644, gi... - gi\|208814367\|ref\|ZP_03255696.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4045], gi\|208735... gi\|208726662, gi... - gi\|208806861\|ref\|ZP_03249198.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4206], gi\|208726... gi\|254794054, gi... - gi\|254794054\|ref\|YP_003078891.1\| outer membrane transporter for monomeric catechol-containing ferric... gi\|195935534 - gi\|195935534\|ref\|ZP_03080916.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4024] gi\|25300743, gi\|... - pir\|\|G91009 colicin I receptor precursor [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|168788968, gi... - gi\|189371405\|gb\|EDU89821.1\| colicin I receptor [Escherichia coli O157:H7 str. EC869], gi\|168788968\|r... gi\|209157860, gi... - gi\|209396460\|ref\|YP_002271566.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4115], gi\|20915... gi\|208739588, gi... - gi\|208819465\|ref\|ZP_03259785.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4042], gi\|208739... gi\|168780002, gi... - gi\|189001955\|gb\|EDU70941.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4076], gi\|168780002\|... gi\|168773130, gi... - gi\|187771049\|gb\|EDU34893.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4196], gi\|168773130\|... gi\|189362983, gi... - gi\|189362983\|gb\|EDU81402.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4486], gi\|168767772\|... gi\|168750539, gi... - gi\|188015327\|gb\|EDU53449.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4113], gi\|168750539\|... gi\|15832301, gi\|... - gi\|15832301\|ref\|NP_311074.1\| colicin I receptor [Escherichia coli O157:H7 str. Sakai], gi\|13362516\|d...	445.0	[0..1]	[663..1]
gi\|110806131, gi... - gi\|110806131\|ref\|YP_689651.1\| colicin I receptor [Shigella flexneri 5 str. 8401], gi\|110615679\|gb\|AB...	443.0	[0..1]	[663..1]
gi\|15802711, gi\|... - gi\|15802711\|ref\|NP_288738.1\| colicin I receptor [Escherichia coli O157:H7 EDL933], gi\|12516475\|gb\|AA... gi\|25300744 - pir\|\|A85854 hypothetical protein cirA [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	442.0	[0..1]	[663..1]

Back

Predicted Domain #1

Region A:
Residues: [1-663]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRLNPFVRV GLCLSAISCA WPVLAVDDDG ETMVVTASSV EQNLKDAPAS ISVITQEDLQ  60
   61 RKPVQNLKDV LKEVPGVQLT NEGDNRKGVS IRGLDSSYTL ILVDGKRVNS RNAVFRHNDF 120
  121 DLNWIPVDSI ERIEVVRGPM SSLYGSDALG GVVNIITKKI GQKWSGTVTV DTTIQEHRDR 180
  181 GDTYNGQFFT SGPLIDGVLG MKAYGSLAKR EKDDPQNSTT TDTGETPRIE GFSSRDGNVE 240
  241 FAWTPNQNHD FTAGYGFDRQ DRDSDSLDKN RLERQNYSVS HNGRWDYGTS ELKYYGEKVE 300
  301 NKNPGNSSPI TSESNTVDGK YTLPLTAINQ FLTVGGEWRH DKLSDAVNLT GGTSSKTSAS 360
  361 QYALFVEDEW RIFEPLALTT GVRMDDHETY GEHWSPRAYL VYNATDTVTV KGGWATAFKA 420
  421 PSLLQLSPDW TSNSCRGACK IVGSPDLKPE TSESWELGLY YMGEEGWLEG VESSVTVFRN 480
  481 DVKDRISISR TSDVNAAPGY QNFVGFETGA NGRRIPVFSY YNVNKARIQG VETELKIPFN 540
  541 DEWKLSINYT YNDGRDVSNG ENKPLSDLPF HTANGTLDWK PLALEDWSFY VSGHYTGQKR 600
  601 ADSATAKTPG GYTIWNTGAA WQVTKDVKLR AGVLNLGDKD LSRDDYSYNE DGRRYFMAVD 660
  661 YRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	2hdfA
Description:	No description for 2hdfA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits