YRC Public Data Repository - Protein Structure Prediction

Protein:	CHPS_ECOLI
Organism:	Escherichia coli
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHPS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15834456, gi\|... - gi\|15834456\|ref\|NP_313229.1\| suppressor of inhibitory function of ChpB [Escherichia coli O157:H7], g... gi\|25299147, gi\|... - pir\|\|B91279 suppressor of inhibitory function of ChpB [imported] - Escherichia coli (strain O157:H7,... gi\|15804815, gi\|... - gi\|15804815\|ref\|NP_290856.1\| antitoxin ChpS [Escherichia coli O157:H7 EDL933], gi\|12519226\|gb\|AAG594... gi\|187770257, gi... - gi\|187775900\|ref\|ZP_02799066.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC4196], gi\|187770257\|... gi\|15834456, gi\|... - gi\|15834456\|ref\|NP_313229.1\| antitoxin ChpS [Escherichia coli O157:H7 str. Sakai], gi\|13364679\|dbj\|B... gi\|217326146, gi... - gi\|217326146\|ref\|ZP_03442230.1\| pemI protein 2 [Escherichia coli O157:H7 str. TW14588], gi\|217322367... gi\|209161649, gi... - gi\|209400249\|ref\|YP_002273767.1\| pemI protein 2 [Escherichia coli O157:H7 str. EC4115], gi\|209161649... gi\|208820070, gi... - gi\|208820070\|ref\|ZP_03260390.1\| pemI protein 2 [Escherichia coli O157:H7 str. EC4042], gi\|208740193\|... gi\|189403832, gi... - gi\|189403832\|ref\|ZP_02785479.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC4501], gi\|189368875\|... gi\|189357814, gi... - gi\|189402053\|ref\|ZP_02779807.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC4401], gi\|189357814\|... gi\|189010532, gi... - gi\|189010532\|ref\|ZP_02807752.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC4076], gi\|188999744\|... gi\|188025112, gi... - gi\|188025112\|ref\|ZP_02776107.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC4113], gi\|188014825\|... gi\|208735137, gi... - gi\|208813860\|ref\|ZP_03255189.1\| pemI protein 2 [Escherichia coli O157:H7 str. EC4045], gi\|208735137\|... gi\|208808171, gi... - gi\|208808171\|ref\|ZP_03250508.1\| pemI protein 2 [Escherichia coli O157:H7 str. EC4206], gi\|208727972\|... gi\|189405587, gi... - gi\|189405587\|ref\|ZP_02822806.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC508], gi\|189379518\|g... gi\|189404630, gi... - gi\|189404630\|ref\|ZP_02809874.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC869], gi\|189374978\|g...	105.0	[0..1]	[83..3]
gi\|194433879, gi... - gi\|194433879\|ref\|ZP_03066152.1\| pemI protein 2 [Shigella dysenteriae 1012], gi\|194417860\|gb\|EDX33956... gi\|192930694, gi... - gi\|193063707\|ref\|ZP_03044795.1\| pemI protein 2 [Escherichia coli E22], gi\|192930694\|gb\|EDV83300.1\| p... gi\|537066, gi\|14... - gi\|537066\|gb\|AAA97121.1\| o83 of GenBank Accession Number M14018 [Escherichia coli], pir\|\|QQECR8 cell... gi\|537066\|gb\|AAA... - o83 of GenBank Accession Number M14018 [Escherichia coli] gi\|16132046, gi\|... - gb\|AAC77181.1\| suppressor of inhibitory function of ChpB, PemI-like, autoregulated; part of proteic ... gi\|226840349, gi... - gi\|254037243\|ref\|ZP_04871320.1\| PemI protein 2 [Escherichia sp. 1_1_43], gi\|226840349\|gb\|EEH72351.1\|...	104.0	[0..1]	[83..3]
gi\|82779483, gi\|... - gi\|82779483\|ref\|YP_405832.1\| antitoxin ChpS [Shigella dysenteriae Sd197], gi\|81243631\|gb\|ABB64341.1\|...	101.0	[0..1]	[83..3]
gi\|238798841, gi... - gi\|77960574\|ref\|ZP_00824439.1\| COG2336: Growth regulator [Yersinia mollaretii ATCC 43969], gi\|238798...	101.0	[0..1]	[83..1]
gi\|17132307, gi\|... - gi\|17230704\|ref\|NP_487252.1\| cell growth regulatory protein [Nostoc sp. PCC 7120], gi\|17132307\|dbj\|B... gi\|25532381 - pir\|\|AE2207 cell growth regulatory protein mazE [imported] - Nostoc sp. (strain PCC 7120)	99.0	[0..1]	[83..1]
gi\|75704791, gi\|... - gi\|75911066\|ref\|YP_325362.1\| transcriptional regulator/antitoxin MazE [Anabaena variabilis ATCC 2941...	99.0	[0..1]	[83..1]
gi\|67534540, gi\|... - gi\|67544325\|ref\|ZP_00422254.1\| PemI-like protein [Burkholderia vietnamiensis G4], gi\|67534540\|gb\|EAM...	99.0	[0..1]	[83..1]
tr\|E4R4D7\|E4R4D7... - PemI-like protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_0816 PE=4 SV=1 gi\|26987506, gi\|... - gi\|26987506\|ref\|NP_742931.1\| PemI-like protein [Pseudomonas putida KT2440], gi\|24982173\|gb\|AAN66395....	97.0	[0..1]	[82..1]
gi\|59938898, gi\|... - gi\|59938898\|gb\|AAX12222.1\| probable plasmid stable inheritance protein I [Xanthomonas axonopodis pv....	90.0	[0..2]	[82..3]
gi\|6458096, gi\|1... - gi\|6458096\|gb\|AAF09994.1\|AE001901_9 ppGpp-regulated growth inhibitor suppressor ChpR/MazE, putative ... gi\|7473639 - pir\|\|A75523 probable ppGpp-regulated growth inhibitor suppressor ChpR/ MazE - Deinococcus radioduran...	90.0	[0..1]	[83..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITIKRWGN SAGMVIPNIV MKELNLQPGQ SVEAQVSNNQ LILTPISRRY SLDELLAQCD  60
   61 MNAAELSEQD VWGKSTPAGD EIW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	1ub4C
Description:	MazE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits