YRC Public Data Repository - Protein Structure Prediction

Protein:	CHBG_ECOLI
Organism:	Escherichia coli
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHBG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|188486962, gi... - gi\|75513771\|ref\|ZP_00736147.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... CHBG_ECOHS - Chitooligosaccharide deacetylase OS=Escherichia coli O9:H4 (strain HS) GN=chbG PE=3 SV=1 CHBG_ECOLC - Chitooligosaccharide deacetylase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=chbG ... gi\|124529987, gi... - gi\|124529987\|ref\|ZP_01700799.1\| YdjC family protein [Escherichia coli B], gi\|124499540\|gb\|EAY47027.1...	337.0	[0..1]	[249..1]
gi\|238793824, gi... - gi\|77978442\|ref\|ZP_00833871.1\| COG3394: Uncharacterized protein conserved in bacteria [Yersinia inte...	331.0	[0..1]	[248..1]
gi\|77973076, gi\|... - gi\|77973076\|ref\|ZP_00828628.1\| COG3394: Uncharacterized protein conserved in bacteria [Yersinia fred...	330.0	[0..1]	[248..1]
CHBG_YERPE - Chitooligosaccharide deacetylase OS=Yersinia pestis GN=chbG PE=3 SV=1 CHBG_YERPB - Chitooligosaccharide deacetylase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=chbG P... gi\|89101624, gi\|... - gi\|89101624\|ref\|ZP_01174344.1\| COG3394: Uncharacterized protein conserved in bacteria [Yersinia pest... CHBG_YERPA - Chitooligosaccharide deacetylase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=chbG PE=3 SV=1 gi\|165925397, gi... - gi\|165925397\|ref\|ZP_02221229.1\| UPF0249 protein ChbG [Yersinia pestis biovar Orientalis str. F199101... gi\|166212487, gi... - gi\|166212487\|ref\|ZP_02238522.1\| UPF0249 protein ChbG [Yersinia pestis biovar Antiqua str. B42003004]... gi\|165992897, gi... - gi\|166008515\|ref\|ZP_02229413.1\| UPF0249 protein ChbG [Yersinia pestis biovar Antiqua str. E1979001],... CHBG_YERPN - Chitooligosaccharide deacetylase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=chbG PE=3 SV=1 gi\|167421331, gi... - gi\|167421331\|ref\|ZP_02313084.1\| UPF0249 protein ChbG [Yersinia pestis biovar Orientalis str. MG05-10... gi\|167399466, gi... - gi\|167399466\|ref\|ZP_02304990.1\| UPF0249 protein ChbG [Yersinia pestis biovar Antiqua str. UG05-0454]... CHBG_YERPY - Chitooligosaccharide deacetylase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=chbG ... gi\|167057485, gi... - gi\|167423315\|ref\|ZP_02315068.1\| UPF0249 protein ChbG [Yersinia pestis biovar Mediaevalis str. K19730... gi\|229838239, gi... - gi\|229838239\|ref\|ZP_04458398.1\| Cellobiose phosphotransferase system YdjC-likeprotein [Yersinia pest... gi\|229895566, gi... - gi\|229895566\|ref\|ZP_04510737.1\| Cellobiose phosphotransferase system YdjC-likeprotein [Yersinia pest... gi\|229688352, gi... - gi\|229898804\|ref\|ZP_04513949.1\| Cellobiose phosphotransferase system YdjC-likeprotein [Yersinia pest... Y2927_YERPS - UPF0249 protein YPTB2927 OS=Yersinia pseudotuberculosis GN=YPTB2927 PE=3 SV=1 gi\|149291840, gi... - gi\|149365427\|ref\|ZP_01887462.1\| hypothetical protein YPE_0582 [Yersinia pestis CA88-4125], gi\|149291... gi\|45437131, gi\|... - gi\|45442267\|ref\|NP_993806.1\| hypothetical protein YP_2484 [Yersinia pestis biovar Microtus str. 9100... CHBG_YERPP - Chitooligosaccharide deacetylase OS=Yersinia pestis (strain Pestoides F) GN=chbG PE=3 SV=1 gi\|22125155, gi\|... - gi\|22125155\|ref\|NP_668578.1\| hypothetical protein y1255 [Yersinia pestis KIM], gi\|21958016\|gb\|AAM848... gi\|15980661, gi\|... - gi\|218929755\|ref\|YP_002347630.1\| hypothetical protein YPO2682 [Yersinia pestis CO92], gi\|16122887\|re... CHBG_YERPS - Chitooligosaccharide deacetylase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=chbG ... CHBG_YERP3 - Chitooligosaccharide deacetylase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=c...	329.0	[0..1]	[248..1]
gi\|193068929, gi... - gi\|75236798\|ref\|ZP_00720869.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c...	329.0	[0..1]	[249..1]
CHBG_SHIFL - Chitooligosaccharide deacetylase OS=Shigella flexneri GN=chbG PE=3 SV=1 gi\|24051810, gi\|... - gi\|24112869\|ref\|NP_707379.1\| hypothetical protein SF1495 [Shigella flexneri 2a str. 301], gi\|2405181... gi\|30063000, gi\|... - gi\|30063000\|ref\|NP_837171.1\| hypothetical protein S1612 [Shigella flexneri 2a str. 2457T], gi\|300412... CHBG_SHIF8 - Chitooligosaccharide deacetylase OS=Shigella flexneri serotype 5b (strain 8401) GN=chbG PE=3 SV=1	328.0	[0..1]	[249..1]
CHBG_SHISS - Chitooligosaccharide deacetylase OS=Shigella sonnei (strain Ss046) GN=chbG PE=3 SV=1	326.0	[0..1]	[249..1]
gi\|75256135, gi\|... - gi\|75256135\|ref\|ZP_00727831.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191169018, gi... - gi\|75227706\|ref\|ZP_00714441.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194413422, gi... - gi\|75210220\|ref\|ZP_00710388.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... CHBG_ECO24 - Chitooligosaccharide deacetylase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=chbG PE=3 S...	325.0	[0..1]	[249..1]
CHBG_ECOL6 - Chitooligosaccharide deacetylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=c... gi\|227885844, gi... - gi\|227885844\|ref\|ZP_04003649.1\| YdjC protein [Escherichia coli 83972], gi\|227837417\|gb\|EEJ47883.1\| Y... CHBG_ECOL6 - UPF0249 protein ChbG OS=Escherichia coli O6 GN=chbG PE=3 SV=1	325.0	[0..1]	[249..1]
CHBG_ECO45 - Chitooligosaccharide deacetylase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=chbG PE=3 SV=1 CHBG_ECOK1 - Chitooligosaccharide deacetylase OS=Escherichia coli O1:K1 / APEC GN=chbG PE=3 SV=1 CHBG_ECO81 - Chitooligosaccharide deacetylase OS=Escherichia coli O81 (strain ED1a) GN=chbG PE=3 SV=1 CHBG_ECOUT - Chitooligosaccharide deacetylase OS=Escherichia coli (strain UTI89 / UPEC) GN=chbG PE=3 SV=1	324.0	[0..1]	[249..1]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLLIVNAD DFGLSKGQNY GIIEACRNGI VTSTTALVNG QAIDHAVQLS RDEPSLAIGM  60
   61 HFVLTMGKPL TAMPGLTRDG VLGKWIWQLA EEDALPLEEI TQELVSQYLR FIELFGRKPT 120
  121 HLDSHHHVHM FPQIFPIVAR FAAEQGIALR ADRQMAFDLP VNLRTTQGFS SAFYGEEISE 180
  181 SLFLQVLDDA GHRGDRSLEV MCHPAFIDNT IRQSAYCFPR LTELDVLTSA SLKGAIAQRG 240
  241 YRLGSYRDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.522879
Match:	2i5iA
Description:	No description for 2i5iA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.412391974836	bayes_pls_golite062009
hydrolase activity	0.333866445066122	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: