YRC Public Data Repository - Protein Structure Prediction

Protein:	CHAB_ECOLI
Organism:	Escherichia coli
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHAB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|76793159, gi\|... - gi\|76793159\|ref\|ZP_00775650.1\| ChaB [Pseudoalteromonas atlantica T6c], gi\|76591549\|gb\|EAO67748.1\| Ch...	117.0	[0..1]	[76..1]
gi\|91069474, gi\|... - gi\|91205930\|ref\|YP_538285.1\| cation transport regulator ChaB [Rickettsia bellii RML369-C], gi\|910694...	114.0	[0..1]	[73..13]
gi\|62737946 - gi\|62737946\|pdb\|1SG7\|A Chain A, Nmr Solution Structure Of The Putative Cation Transport Regulator Ch...	109.0	[0..2]	[76..22]
gi\|157802014, gi... - gi\|157826710\|ref\|YP_001495774.1\| cation transport regulator ChaB [Rickettsia bellii OSU 85-389], gi\|...	109.0	[0..1]	[73..1]
gi\|20905180, gi\|... - gi\|21226875\|ref\|NP_632797.1\| putative cation transport regulator [Methanosarcina mazei Go1], gi\|2090...	109.0	[0..1]	[75..6]
gi\|77954157, gi\|... - gi\|77954157\|ref\|ZP_00818556.1\| cation transport regulator [Marinobacter aquaeolei VT8], gi\|77866912\|...	105.0	[0..1]	[74..1]
gi\|16760116 - gi\|16760116\|ref\|NP_455733.1\| cation transport regulator [Salmonella enterica subsp. enterica serovar... gi\|168237824, gi... - gi\|197289212\|gb\|EDY28579.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|16765111, gi\|... - gi\|16765111\|ref\|NP_460726.1\| cation transport regulator [Salmonella typhimurium LT2], gi\|16420300\|gb... gi\|29137742, gi\|... - gi\|29142113\|ref\|NP_805455.1\| cation transport regulator [Salmonella enterica subsp. enterica serovar... gi\|194444165, gi... - gi\|194444165\|ref\|YP_002041020.1\| hypothetical protein SNSL254_A1901 [Salmonella enterica subsp. ente... gi\|168820508, gi... - gi\|205342609\|gb\|EDZ29373.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|168462754, gi... - gi\|195633868\|gb\|EDX52220.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|205339114, gi... - gi\|205339114\|gb\|EDZ25878.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|62127967, gi\|... - gi\|62180334\|ref\|YP_216751.1\| cation transport regulator [Salmonella enterica subsp. enterica serovar... gi\|213852601 - gi\|213852601\|ref\|ZP_03382133.1\| cation transport regulator [Salmonella enterica subsp. enterica sero... gi\|213646306 - gi\|213646306\|ref\|ZP_03376359.1\| cation transport regulator [Salmonella enterica subsp. enterica sero... gi\|213612428 - gi\|213612428\|ref\|ZP_03370254.1\| cation transport regulator [Salmonella enterica subsp. enterica sero... gi\|213428328 - gi\|213428328\|ref\|ZP_03361078.1\| cation transport regulator [Salmonella enterica subsp. enterica sero... gi\|224468267, gi... - gi\|224583740\|ref\|YP_002637538.1\| cation transport regulator ChaB [Salmonella enterica subsp. enteric... gi\|214000429 - gi\|214000429\|ref\|ZP_03411164.1\| cation transport regulator [Salmonella enterica subsp. enterica sero... gi\|213979803 - gi\|213979803\|ref\|ZP_03407062.1\| cation transport regulator [Salmonella enterica subsp. enterica sero... gi\|197263851, gi... - gi\|197263851\|ref\|ZP_03163925.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197248572, gi... - gi\|197248572\|ref\|YP_002146259.1\| hypothetical protein SeAg_B1369 [Salmonella enterica subsp. enteric... gi\|194737233, gi... - gi\|194737233\|ref\|YP_002114800.1\| hypothetical protein SeSA_A1907 [Salmonella enterica subsp. enteric... gi\|194450547, gi... - gi\|194450547\|ref\|YP_002045813.1\| cation transport regulator [Salmonella enterica subsp. enterica ser... gi\|213420506 - gi\|213420506\|ref\|ZP_03353572.1\| cation transport regulator [Salmonella enterica subsp. enterica sero... gi\|16502410, gi\|... - gi\|25511791\|pir\|\|AB0648 cation transport regulator ChaB STY1282 [imported] - Salmonella enterica sub... gi\|213163603 - gi\|213163603\|ref\|ZP_03349313.1\| cation transport regulator [Salmonella enterica subsp. enterica sero... gi\|213029406 - gi\|213029406\|ref\|ZP_03343853.1\| cation transport regulator [Salmonella enterica subsp. enterica sero... gi\|204323307, gi... - gi\|204927965\|ref\|ZP_03219166.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|238913670 - gi\|238913670\|ref\|ZP_04657507.1\| cation transport regulator [Salmonella enterica subsp. enterica sero...	105.0	[0..1]	[75..1]
gi\|82703558, gi\|... - gi\|82703558\|ref\|YP_413124.1\| ChaB [Nitrosospira multiformis ATCC 25196], gi\|82411623\|gb\|ABB75732.1\| ...	105.0	[0..1]	[76..1]
gi\|83633587, gi\|... - gi\|83645544\|ref\|YP_433979.1\| putative cation transport regulator [Hahella chejuensis KCTC 2396], gi\|...	105.0	[0..1]	[74..1]
gi\|67005011, gi\|... - gi\|67459478\|ref\|YP_247102.1\| cation transport regulator ChaB [Rickettsia felis URRWXCal2], gi\|670050...	104.0	[0..1]	[75..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYKTKSDLP ESVKHVLPSH AQDIYKEAFN SAWDQYKDKE DRRDDASREE TAHKVAWAAV  60
   61 KHEYAKGDDD KWHKKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1sg7A
Description:	NMR solution structure of the putative cation transport regulator ChaB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits