YRC Public Data Repository - Protein Structure Prediction

Protein:	CHAA_ECOLI
Organism:	Escherichia coli
Length:	366 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHAA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|46136511, gi\|... - gi\|46136511\|ref\|XP_389947.1\| hypothetical protein FG09771.1 [Gibberella zeae PH-1], gi\|42553297\|gb\|E...	268.0	[0..4]	[361..162]
gi\|111057198 - gi\|111057198\|gb\|EAT78318.1\| hypothetical protein SNOG_14447 [Phaeosphaeria nodorum SN15]	233.0	[0..19]	[365..296]
gi\|39944296, gi\|... - gi\|39944296\|ref\|XP_361685.1\| hypothetical protein MGG_04159 [Magnaporthe grisea 70-15], gb\|EAA50400....	218.0	[0..4]	[365..178]
gi\|90305973, gi\|... - gi\|90305973\|gb\|EAS35604.1\| hypothetical protein CIMG_00958 [Coccidioides immitis RS], gi\|119193162\|r...	217.0	[0..8]	[363..44]
gi\|49108966, gi\|... - gi\|67901046\|ref\|XP_680779.1\| hypothetical protein AN7510.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	217.0	[0..18]	[365..166]
gi\|83766993 - gi\|83766993\|dbj\|BAE57133.1\| unnamed protein product [Aspergillus oryzae] gi\|169769330 - gi\|169769330\|ref\|XP_001819135.1\| hypothetical protein [Aspergillus oryzae RIB40]	214.0	[0..14]	[365..169]
gi\|85107027 - gi\|85107027\|ref\|XP_962297.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28923899, gi\|... - gi\|32415878\|ref\|XP_328417.1\| hypothetical protein [Neurospora crassa], gi\|28923899\|gb\|EAA33061.1\| hy...	213.0	[0..4]	[366..165]
gi\|115390915, gi... - gi\|115390915\|ref\|XP_001212962.1\| hypothetical protein ATEG_03784 [Aspergillus terreus NIH2624], gi\|1...	212.0	[0..19]	[365..60]
CAX2_ARATH - Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2	210.0	[0..2]	[365..58]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNAQEAVKT RHKETSLIFP VLALVVLFLW GSSQTLPVVI AINLLALIGI LSSAFSVVRH  60
   61 ADVLAHRLGE PYGSLILSLS VVILEVSLIS ALMATGDAAP TLMRDTLYSI IMIVTGGLVG 120
  121 FSLLLGGRKF ATQYMNLFGI KQYLIALFPL AIIVLVFPMA LPAANFSTGQ ALLVALISAA 180
  181 MYGVFLLIQT KTHQSL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [197-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVYEHEDDSD DDDPHHGKPS AHSSLWHAIW LIIHLIAVIA VTKMNASSLE TLLDSMNAPV  60
   61 AFTGFLVALL ILSPEGLGAL KAVLNNQVQR AMNLFFGSVL ATISLTVPVV TLIAFMTGNE 120
  121 LQFALGAPEM VVMVASLVLC HISFSTGRTN VLNGAAHLAL FAAYLMTIFA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.080922
Match:	PF01699.15
Description:	No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits