YRC Public Data Repository - Protein Structure Prediction

Protein:	CCME_ECOLI
Organism:	Escherichia coli
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCME_ECOLI.

Description	E-value	Query Range	Subject Range
CCME_ECO8A - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O8 (strain IAI1) GN=ccmE PE=3 SV=1 gi\|190904574, gi... - gi\|75231465\|ref\|ZP_00717834.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Escherichia coli ...	244.0	[0..1]	[159..1]
CCME_SHISS - Cytochrome c-type biogenesis protein CcmE OS=Shigella sonnei (strain Ss046) GN=ccmE PE=3 SV=1	242.0	[0..1]	[159..1]
gi\|77962598 - gi\|77962598\|ref\|ZP_00826416.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Yersinia mollaret...	241.0	[0..1]	[159..1]
gi\|115348421, gi... - gi\|218929810\|ref\|YP_002347685.1\| cytochrome c-type biogenesis protein CcmE [Yersinia pestis CO92], g... gi\|165915000, gi... - gi\|89103125\|ref\|ZP_01175717.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Yersinia pestis b... CCME_YERPS - Cytochrome c-type biogenesis protein CcmE OS=Yersinia pseudotuberculosis GN=ccmE PE=3 SV=1 CCME_YERPA - Cytochrome c-type biogenesis protein CcmE OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ccmE PE... CCME_YERPN - Cytochrome c-type biogenesis protein CcmE OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ccmE P... CCME_YERP3 - Cytochrome c-type biogenesis protein CcmE OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31... gi\|229838305, gi... - gi\|229838305\|ref\|ZP_04458464.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis biova... gi\|229701642, gi... - gi\|229895334\|ref\|ZP_04510507.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis Pesto... gi\|22125466, gi\|... - gi\|22125466\|ref\|NP_668889.1\| cytochrome c-type biogenesis protein CcmE [Yersinia pestis KIM], gi\|219... gi\|229898870, gi... - gi\|229898870\|ref\|ZP_04514015.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis biova... CCME_YERPE - Cytochrome c-type biogenesis protein CcmE OS=Yersinia pestis GN=ccmE PE=3 SV=1 CCME_YERPS - Cytochrome c-type biogenesis protein CcmE OS=Yersinia pseudotuberculosis serotype I (strain IP32953)... gi\|45437079, gi\|... - gi\|45442215\|ref\|NP_993754.1\| cytochrome c-type biogenesis protein CcmE [Yersinia pestis biovar Micro... CCME_YERPG - Cytochrome c-type biogenesis protein CcmE OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ccmE PE=... gi\|149365212, gi... - gi\|149365212\|ref\|ZP_01887247.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis CA88-... CCME_YERPB - Cytochrome c-type biogenesis protein CcmE OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) ... CCME_YERPP - Cytochrome c-type biogenesis protein CcmE OS=Yersinia pestis (strain Pestoides F) GN=ccmE PE=3 SV=1 gi\|166008271, gi... - gi\|166008271\|ref\|ZP_02229169.1\| cytochrome c-type biogenesis protein CcmE [Yersinia pestis biovar An... gi\|165925263, gi... - gi\|165925263\|ref\|ZP_02221095.1\| cytochrome c-type biogenesis protein CcmE [Yersinia pestis biovar Or... gi\|167051700, gi... - gi\|167399196\|ref\|ZP_02304720.1\| cytochrome c-type biogenesis protein CcmE [Yersinia pestis biovar An... gi\|166204595, gi... - gi\|166214239\|ref\|ZP_02240274.1\| cytochrome c-type biogenesis protein CcmE [Yersinia pestis biovar An... gi\|167056369, gi... - gi\|167424487\|ref\|ZP_02316240.1\| cytochrome c-type biogenesis protein CcmE [Yersinia pestis biovar Me... gi\|166960872, gi... - gi\|167421383\|ref\|ZP_02313136.1\| cytochrome c-type biogenesis protein CcmE [Yersinia pestis biovar Or... CCME_YERPY - Cytochrome c-type biogenesis protein CcmE OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII)... gi\|167467415 - gi\|167467415\|ref\|ZP_02332119.1\| cytochrome c-type biogenesis protein CcmE [Yersinia pestis FV-1]	241.0	[0..1]	[159..1]
gi\|213982470 - gi\|213982470\|ref\|ZP_03409729.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213864996 - gi\|213864996\|ref\|ZP_03387115.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213649798 - gi\|213649798\|ref\|ZP_03379851.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... CCME_SALPA - Cytochrome c-type biogenesis protein CcmE OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=c... gi\|213622129 - gi\|213622129\|ref\|ZP_03374912.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|214002762 - gi\|214002762\|ref\|ZP_03413497.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213028718 - gi\|213028718\|ref\|ZP_03343165.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... CCME_SALPA - Cytochrome c-type biogenesis protein CcmE OS=Salmonella paratyphi A GN=ccmE1 PE=3 SV=1 gi\|197093260, gi... - gi\|197364622\|ref\|YP_002144259.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subs... gi\|161366294, gi... - gi\|161616930\|ref\|YP_001590895.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subs... gi\|213582978 - gi\|213582978\|ref\|ZP_03364804.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213426282 - gi\|213426282\|ref\|ZP_03359032.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213417326 - gi\|213417326\|ref\|ZP_03350469.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213051720 - gi\|213051720\|ref\|ZP_03344598.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|16761178, gi\|... - gi\|16762507\|ref\|NP_458124.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subsp. e... CCME_SALTI - Cytochrome c-type biogenesis protein CcmE OS=Salmonella typhi GN=ccmE1 PE=3 SV=1 CCME_SALTI - Cytochrome c-type biogenesis protein ccmE OS=Salmonella typhi GN=ccmE1 PE=3 SV=1 gi\|29141128, gi\|... - gi\|29143996\|ref\|NP_807338.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subsp. e...	241.0	[0..1]	[159..1]
gi\|77957977 - gi\|77957977\|ref\|ZP_00822019.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Yersinia bercovie...	241.0	[0..1]	[159..1]
gi\|194447400, gi... - gi\|194450930\|ref\|YP_002047846.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subs... gi\|197262237, gi... - gi\|197265750\|ref\|ZP_03165824.1\| ABC family protein [Salmonella enterica subsp. enterica serovar Sain... lcl\|NC_016856.1_... - [gene=ccmE_1] [protein=cytochrome c-type biogenesis protein CcmE] [protein_id=YP_005238316.1] [locat... gi\|205329412, gi... - gi\|205329412\|gb\|EDZ16176.1\| ABC family protein [Salmonella enterica subsp. enterica serovar 4,[5],12... gi\|168242361, gi... - gi\|205339032\|gb\|EDZ25796.1\| ABC family protein [Salmonella enterica subsp. enterica serovar Heidelbe... gi\|238913969 - gi\|238913969\|ref\|ZP_04657806.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subsp... CCME_SALTY - Cytochrome c-type biogenesis protein ccmE OS=Salmonella typhimurium GN=ccmE1 PE=3 SV=1 CCME_SALTY - Cytochrome c-type biogenesis protein CcmE OS=Salmonella typhimurium GN=ccmE1 PE=3 SV=1 CCME_SALTY - Cytochrome c-type biogenesis protein CcmE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... gi\|199604595, gi... - gi\|200388964\|ref\|ZP_03215576.1\| ABC family protein [Salmonella enterica subsp. enterica serovar Virc...	240.0	[0..1]	[159..1]
CCME1_SALCH - Cytochrome c-type biogenesis protein CcmE 1 OS=Salmonella choleraesuis GN=ccmE1 PE=3 SV=1 CCME1_SALCH - Cytochrome c-type biogenesis protein CcmE 1 OS=Salmonella choleraesuis (strain SC-B67) GN=ccmE1 PE=3... gi\|224470143, gi... - gi\|224585615\|ref\|YP_002639414.1\| periplasmic heme-dependent peroxidase [Salmonella enterica subsp. e... CCME1_SALCH - Cytochrome c-type biogenesis protein ccmE 1 OS=Salmonella choleraesuis GN=ccmE1 PE=3 SV=1	240.0	[0..1]	[159..1]
gi\|77975553 - gi\|77975553\|ref\|ZP_00831088.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Yersinia frederik...	238.0	[0..1]	[158..1]
gi\|90438844, gi\|... - gi\|90579959\|ref\|ZP_01235767.1\| cytochrome c-type biogenesis heme chaperone [Vibrio angustum S14], gi...	231.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIRRKNRLW IACAVLAGLA LTIGLVLYAL RSNIDLFYTP GEILYGKRET QQMPEVGQRL  60
   61 RVGGMVMPGS VQRDPNSLKV TFTIYDAEGS VDVSYEGILP DLFREGQGVV VQGELEKGNH 120
  121 ILAKEVLAKH DENYTPPEVE KAMEANHRRP ASVYKDPAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1sr3A
Description:	Solution structure of the heme chaperone CcmE of Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.44742917397369	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: