YRC Public Data Repository - Protein Structure Prediction

Protein:	CCMC_ECOLI
Organism:	Escherichia coli
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCMC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238791944, gi... - gi\|77979095\|ref\|ZP_00834516.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi...	197.0	[0..1]	[244..1]
gi\|89103127, gi\|... - gi\|89103127\|ref\|ZP_01175719.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|108808102, gi... - gi\|108808102\|ref\|YP_652018.1\| putative heme exporter protein C [Yersinia pestis Antiqua], gi\|1087800... gi\|108776020, gi... - gi\|229902733\|ref\|ZP_04517850.1\| putative heme exporter protein C [Yersinia pestis Nepal516], gi\|2296... gi\|229694669, gi... - gi\|229838303\|ref\|ZP_04458462.1\| putative heme exporter protein C [Yersinia pestis biovar Orientalis ... gi\|25297407 - pir\|\|AH0333 probable heme exporter protein C ccmC [imported] - Yersinia pestis (strain CO92) gi\|229701640, gi... - gi\|229895332\|ref\|ZP_04510505.1\| putative heme exporter protein C [Yersinia pestis Pestoides A], gi\|2... gi\|229898868, gi... - gi\|229898868\|ref\|ZP_04514013.1\| putative heme exporter protein C [Yersinia pestis biovar Orientalis ... gi\|45442217, gi\|... - gi\|45442217\|ref\|NP_993756.1\| putative heme exporter protein C [Yersinia pestis biovar Microtus str. ... gi\|149291623, gi... - gi\|149365210\|ref\|ZP_01887245.1\| putative heme exporter protein C [Yersinia pestis CA88-4125], gi\|149... gi\|22125464, gi\|... - gi\|22125464\|ref\|NP_668887.1\| heme exporter protein C [Yersinia pestis KIM], gi\|21958357\|gb\|AAM85138.... gi\|145599302, gi... - gi\|145599302\|ref\|YP_001163378.1\| heme exporter protein C [Yersinia pestis Pestoides F], gi\|145210998... gi\|117673078, gi... - gi\|77629695\|ref\|ZP_00792281.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|170023739, gi... - gi\|170023739\|ref\|YP_001720244.1\| heme exporter protein CcmC [Yersinia pseudotuberculosis YPIII], gi\|... gi\|218929808, gi... - gi\|218929808\|ref\|YP_002347683.1\| putative heme exporter protein C [Yersinia pestis CO92], gi\|1612294... gi\|167467413 - gi\|167467413\|ref\|ZP_02332117.1\| heme exporter protein CcmC [Yersinia pestis FV-1] gi\|165992846, gi... - gi\|166008464\|ref\|ZP_02229362.1\| heme exporter protein CcmC [Yersinia pestis biovar Antiqua str. E197... gi\|165922815, gi... - gi\|165925208\|ref\|ZP_02221040.1\| heme exporter protein CcmC [Yersinia pestis biovar Orientalis str. F... gi\|167051505, gi... - gi\|167399001\|ref\|ZP_02304525.1\| heme exporter protein CcmC [Yersinia pestis biovar Antiqua str. UG05... gi\|166214220, gi... - gi\|166214220\|ref\|ZP_02240255.1\| heme exporter protein CcmC [Yersinia pestis biovar Antiqua str. B420... gi\|167424628, gi... - gi\|167424628\|ref\|ZP_02316381.1\| heme exporter protein CcmC [Yersinia pestis biovar Mediaevalis str. ... gi\|77635282, gi\|... - gi\|77635282\|ref\|ZP_00797368.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi... gi\|167421245, gi... - gi\|167421245\|ref\|ZP_02312998.1\| heme exporter protein CcmC [Yersinia pestis biovar Orientalis str. M...	196.0	[0..1]	[244..1]
gi\|28898995, gi\|... - gi\|28898995\|ref\|NP_798600.1\| heme exporter protein C [Vibrio parahaemolyticus RIMD 2210633], gi\|2880... gi\|28807214 - gi\|28807214\|dbj\|BAC60484.1\| heme exporter protein C [Vibrio parahaemolyticus RIMD 2210633] gi\|153836934, gi... - gi\|153836934\|ref\|ZP_01989601.1\| heme exporter protein C [Vibrio parahaemolyticus AQ3810], gi\|1497497...	195.0	[0..1]	[244..1]
gi\|75854962, gi\|... - gi\|75854962\|ref\|ZP_00762629.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi...	195.0	[0..1]	[244..1]
Q668U0\|Q668U0_YERPS - Putative ABC type heme exporter, permease subunit ccmC - Yersinia pseudotuberculosis gi\|51590248, gi\|... - gi\|51596966\|ref\|YP_071157.1\| putative ABC type heme exporter, permease subunit ccmC [Yersinia pseudo... gi\|186896049, gi... - gi\|186896049\|ref\|YP_001873161.1\| heme exporter protein CcmC [Yersinia pseudotuberculosis PB1/+], gi\|...	195.0	[0..1]	[244..1]
gi\|77962596, gi\|... - gi\|77962596\|ref\|ZP_00826414.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi...	194.0	[0..1]	[244..1]
gi\|88793796, gi\|... - gi\|88793796\|ref\|ZP_01109509.1\| heme exporter protein C [Alteromonas macleodii 'Deep ecotype'], gi\|88...	194.0	[0..1]	[239..1]
gi\|90328264, gi\|... - gi\|90411051\|ref\|ZP_01219065.1\| heme exporter protein C [Photobacterium profundum 3TCK], gi\|90328264\|...	194.0	[0..1]	[240..1]
gi\|91191659, gi\|... - gi\|91223573\|ref\|ZP_01258838.1\| heme exporter protein C [Vibrio alginolyticus 12G01], gi\|91191659\|gb\|...	194.0	[0..1]	[244..1]
gi\|77957979, gi\|... - gi\|77957979\|ref\|ZP_00822021.1\| COG0755: ABC-type transport system involved in cytochrome c biogenesi...	194.0	[0..1]	[244..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKTLHQLAI PPRLYQICGW FIPWLAIASV VVLTVGWIWG FGFAPADYQQ GNSYRIIYLH  60
   61 VPAAIWSMGI YASMAVAAFI GLVWQMKMAN LAVAAMAPIG AVFTFIALVT GSAWGKPMWG 120
  121 TWWVWDARLT SELVLLFLYV GVIALWHAFD DRRLAGRAAG ILVLIGVVNL PIIHYSVEWW 180
  181 NTLHQGSTRM QQSIDPAMRS PLRWSIFGFL LLSATLTLMR MRNLILLMEK RRPWVSELIL 240
  241 KRGRK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.79588
Match:	PF01578.11
Description:	No description for PF01578.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits