YRC Public Data Repository - Protein Structure Prediction

Protein:	CCMB_ECOLI
Organism:	Escherichia coli
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCMB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|58426371 - gi\|58426371\|gb\|AAW75408.1\| ABC transporter heme permease [Xanthomonas oryzae pv. oryzae KACC10331]	200.0	[0..5]	[219..740]
gi\|68513738, gi\|... - gi\|68548564\|ref\|ZP_00588055.1\| Cytochrome c-type biogenesis protein CcmB [Shewanella amazonensis SB2...	148.0	[0..3]	[218..11]
gi\|110603650, gi... - gi\|110603650\|ref\|ZP_01391726.1\| daunorubicin resistance ABC transporter membrane protein [Methanocul...	144.0	[0..2]	[217..346]
gi\|91716919, gi\|... - gi\|91794917\|ref\|YP_564568.1\| heme exporter protein CcmB [Shewanella denitrificans OS217], gi\|9171691...	143.0	[0..3]	[218..11]
gi\|124545842, gi... - gi\|124545842\|ref\|ZP_01704992.1\| heme exporter protein CcmB [Shewanella putrefaciens 200], gi\|1245104... gi\|82743883, gi\|... - gi\|82743883\|ref\|ZP_00906500.1\| Cytochrome c-type biogenesis protein CcmB [Shewanella sp. W3-18-1], g... gi\|77816519, gi\|... - gi\|77816519\|ref\|ZP_00815701.1\| Cytochrome c-type biogenesis protein CcmB [Shewanella putrefaciens CN...	143.0	[0..3]	[218..11]
gi\|152998780, gi... - gi\|152998780\|ref\|YP_001364461.1\| heme exporter protein CcmB [Shewanella baltica OS185], gi\|151363398... gi\|146862050, gi... - gi\|217975170\|ref\|YP_002359921.1\| heme exporter protein CcmB [Shewanella baltica OS223], gi\|217500305... gi\|113905954, gi... - gi\|160873356\|ref\|YP_001552672.1\| heme exporter protein CcmB [Shewanella baltica OS195], gi\|160858878... gi\|68518222, gi\|... - gi\|68544067\|ref\|ZP_00583742.1\| Cytochrome c-type biogenesis protein CcmB [Shewanella baltica OS155],...	142.0	[0..3]	[218..11]
gi\|78504064, gi\|... - gi\|78688194\|ref\|ZP_00852910.1\| Cytochrome c-type biogenesis protein CcmB [Shewanella sp. ANA-3], gi\|...	142.0	[0..3]	[218..11]
gi\|88858077, gi\|... - gi\|88858077\|ref\|ZP_01132719.1\| heme exporter protein B, ABC superfamily (Cytochrome c-type biogenesi...	141.0	[0..2]	[219..10]
gi\|69954093, gi\|... - gi\|69954093\|ref\|ZP_00640921.1\| Cytochrome c-type biogenesis protein CcmB [Shewanella frigidimarina N...	140.0	[0..3]	[218..11]
gi\|78691166, gi\|... - gi\|78691166\|ref\|ZP_00855794.1\| Cytochrome c-type biogenesis protein CcmB [Shewanella sp. MR-7], gi\|7... gi\|113968575, gi... - gi\|82498601\|ref\|ZP_00884084.1\| Cytochrome c-type biogenesis protein CcmB [Shewanella sp. MR-4], gi\|8...	140.0	[0..3]	[218..11]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFWRIFRLE LRVAFRHSAE IANPLWFFLI VITLFPLSIG PEPQLLARIA PGIIWVAALL  60
   61 SSLLALERLF RDDLQDGSLE QLMLLPLPLP AVVLAKVMAH WMVTGLPLLI LSPLVAMLLG 120
  121 MDVYGWQVMA LTLLLGTPTL GFLGAPGVAL TVGLKRGGVL LSILVLPLTI PLLIFATAAM 180
  181 DAASMHLPVD GYLAILGALL AGTATLSPFA TAAALRISIQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits