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View Structure Prediction Details

Protein: CAPP_ECOLI
Organism: Escherichia coli
Length: 883 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAPP_ECOLI.

Description E-value Query
Range
Subject
Range
gi|7436543, gi|2... - pir||T09846 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 1 - upland cotton, gi|2266947|gb|AAB80714....
1369.0 [0..1] [883..24]
gi|45505269 - gi|45505269|gb|AAS67006.1| Phosphoenolpyruvate carboxylase [Glycine max]
1360.0 [0..1] [883..24]
gi|5616255 - gi|5616255|gb|AAD45696.1|AF159051_1 phosphoenolpyruvate carboxylase [Picea abies]
1358.0 [0..1] [883..16]
CAPPC_FLATR - Phosphoenolpyruvate carboxylase 2 OS=Flaveria trinervia GN=PPCC PE=1 SV=1
1357.0 [0..1] [883..24]
gi|20162467 - gi|20162467|gb|AAM14597.1|AF494192_1 phosphoenolpyruvate carboxylase FPUB966 [Flaveria pubescens]
1356.0 [0..1] [883..24]
gi|763097, gi|10... - gi|763097|emb|CAA88829.1| phosphoenolpyruvate carboxylase [Flaveria pringlei], pir||S52853 phosphoen...
1355.0 [0..1] [883..24]
gi|20162465 - gi|20162465|gb|AAM14596.1|AF494191_1 phosphoenolpyruvate carboxylase FB966 [Flaveria brownii]
1354.0 [0..1] [883..24]
CAPP2_MESCR - Phosphoenolpyruvate carboxylase 2 OS=Mesembryanthemum crystallinum GN=PPC2 PE=3 SV=1
1351.0 [0..1] [883..16]

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Predicted Domain #1
Region A:
Residues: [1-883]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEQYSALRS NVSMLGKVLG ETIKDALGEH ILERVETIRK LSKSSRAGND ANRQELLTTL  60
   61 QNLSNDELLP VARAFSQFLN LANTAEQYHS ISPKGEAASN PEVIARTLRK LKNQPELSED 120
  121 TIKKAVESLS LELVLTAHPT EITRRTLIHK MVEVNACLKQ LDNKDIADYE HNQLMRRLRQ 180
  181 LIAQSWHTDE IRKLRPSPVD EAKWGFAVVE NSLWQGVPNY LRELNEQLEE NLGYKLPVEF 240
  241 VPVRFTSWMG GDRDGNPNVT ADITRHVLLL SRWKATDLFL KDIQVLVSEL SMVEATPELL 300
  301 ALVGEEGAAE PYRYLMKNLR SRLMATQAWL EARLKGEELP KPEGLLTQNE ELWEPLYACY 360
  361 QSLQACGMGI IANGDLLDTL RRVKCFGVPL VRIDIRQEST RHTEALGELT RYLGIGDYES 420
  421 WSEADKQAFL IRELNSKRPL LPRNWQPSAE TREVLDTCQV IAEAPQGSIA AYVISMAKTP 480
  481 SDVLAVHLLL KEAGIGFAMP VAPLFETLDD LNNANDVMTQ LLNIDWYRGL IQGKQMVMIG 540
  541 YSDSAKDAGV MAASWAQYQA QDALIKTCEK AGIELTLFHG RGGSIGRGGA PAHAALLSQP 600
  601 PGSLKGGLRV TEQGEMIRFK YGLPEITVSS LSLYTGAILE ANLLPPPEPK ESWRRIMDEL 660
  661 SVISCDVYRG YVRENKDFVP YFRSATPEQE LGKLPLGSRP AKRRPTGGVE SLRAIPWIFA 720
  721 WTQNRLMLPA WLGAGTALQK VVEDGKQSEL EAMCRDWPFF STRLGMLEMV FAKADLWLAE 780
  781 YYDQRLVDKA LWPLGKELRN LQEEDIKVVL AIANDSHLMA DLPWIAESIQ LRNIYTDPLN 840
  841 VLQAELLHRS RQAEKEGQEP DPRVEQALMV TIAGIAAGMR NTG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1jqoA
Description: Phosphoenolpyruvate carboxylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.96882793316847 bayes_pls_golite062009
3-methyl-2-oxobutanoate hydroxymethyltransferase activity 1.14607009350249 bayes_pls_golite062009
isocitrate lyase activity 0.788938993856531 bayes_pls_golite062009
lyase activity 0.70986506551964 bayes_pls_golite062009
transferase activity 0.5687068385416 bayes_pls_golite062009
oxo-acid-lyase activity 0.404868472347919 bayes_pls_golite062009
carbon-carbon lyase activity 0.36217387205482 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle