YRC Public Data Repository - Protein Structure Prediction

Protein:	CAIT_ECOLI
Organism:	Escherichia coli
Length:	504 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAIT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26990662, gi\|... - gi\|26990662\|ref\|NP_746087.1\| choline/carnitine/betaine transporter family protein [Pseudomonas putid... tr\|E4RG06\|E4RG06... - Choline/carnitine/betaine transporter family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIR...	615.0	[0..5]	[502..6]
gi\|218894394, gi... - gi\|218894394\|ref\|YP_002443264.1\| putative choline transporter [Pseudomonas aeruginosa LESB58], gi\|21... gi\|194548998, gi... - gi\|84317840\|ref\|ZP_00966275.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|11351182 - pir\|\|G82985 probable choline transporter PA5291 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|53726738, gi\|... - gi\|53726738\|ref\|ZP_00141772.2\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|107104392 - gi\|107104392\|ref\|ZP_01368310.1\| hypothetical protein PaerPA_01005468 [Pseudomonas aeruginosa PACS2] gi\|15600484, gi\|... - gi\|9951605\|gb\|AAG08676.1\|AE004941_9 probable choline transporter [Pseudomonas aeruginosa PAO1], gi\|1...	603.0	[0..4]	[502..5]
gi\|194554807, gi... - gi\|84324003\|ref\|ZP_00972068.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ...	603.0	[0..4]	[502..5]
gi\|152986479, gi... - gi\|94417776\|ref\|ZP_01297593.1\| hypothetical protein PaerP_01000558 [Pseudomonas aeruginosa PA7], gi\|...	593.0	[0..4]	[502..5]
gi\|196156622, gi... - gi\|88795308\|ref\|ZP_01111007.1\| Choline-glycine betaine transporter [Alteromonas macleodii 'Deep ecot...	579.0	[0..1]	[501..1]
gi\|93452062, gi\|... - gi\|94267305\|ref\|ZP_01290841.1\| BCCT transporter [delta proteobacterium MLMS-1], gi\|93452062\|gb\|EAT02...	578.0	[0..2]	[501..8]
gi\|33574349 - gi\|33574349\|emb\|CAE38685.1\| high-affinity choline transport protein [Bordetella parapertussis] gi\|33597920 - gi\|33597920\|ref\|NP_885563.1\| high-affinity choline transport protein [Bordetella parapertussis 12822...	578.0	[0..7]	[502..6]
gi\|83648930, gi\|... - gi\|83648930\|ref\|YP_437365.1\| choline-glycine betaine transporter [Hahella chejuensis KCTC 2396], gi\|...	578.0	[0..3]	[502..2]
gi\|33571643, gi\|... - gi\|33591999\|ref\|NP_879643.1\| high-affinity choline transport protein [Bordetella pertussis Tohama I]... gi\|33602825, gi\|... - gi\|33602825\|ref\|NP_890385.1\| high-affinity choline transport protein [Bordetella bronchiseptica RB50...	577.0	[0..7]	[502..6]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNEKRKTGI EPKVFFPPLI IVGILCWLTV RDLDAANVVI NAVFSYVTNV WGWAFEWYMV  60
   61 VMLFGWFWLV FGPYAKKRLG NEPPEFSTAS WIFMMFASCT SAAVLFWGSI EIYYYISTPP 120
  121 FGL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-305]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPNSTGAKEL GLAYSLFHWG PLPWATYSFL SVAFAYFFFV RKMEVIRPSS TLVPLVGEKH  60
   61 AKGLFGTIVD NFYLVALIFA MGTSLGLATP LVTECMQWLF GIPHTLQLDA IIITCWIILN 120
  121 AICVACGLQK GVRIASDVRS YLSFLMLGWV FIVSGASFIM NYFTDSVGML LMYLPRMLFY 180
  181 TD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [306-504]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIAKGGFPQG WTVFYWAWWV IYAIQMSIFL ARISRGRTVR ELCFGMVLGL TASTWILWTV  60
   61 LGSNTLLLID KNIINIPNLI EQYGVARAII ETWAALPLST ATMWGFFILC FIATVTLVNA 120
  121 CSYTLAMSTC REVRDGEEPP LLVRIGWSIL VGIIGIVLLA LGGLKPIQTA IIAGGCPLFF 180
  181 VNIMVTLSFI KDAKQNWKD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits