YRC Public Data Repository - Protein Structure Prediction

Protein:	CAIF_ECOLI
Organism:	Escherichia coli
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAIF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110613649, gi... - gi\|110804101\|ref\|YP_687621.1\| DNA-binding transcriptional activator CaiF [Shigella flexneri 5 str. 8...	259.0	[0..1]	[131..36]
gi\|91070669, gi\|... - gi\|91209095\|ref\|YP_539081.1\| transcriptional activatory protein CaiF [Escherichia coli UTI89], gi\|91... gi\|226902089, gi... - gi\|237704177\|ref\|ZP_04534658.1\| transcriptional activatory protein caiF [Escherichia sp. 3_2_53FAA],... gi\|26106355, gi\|... - gi\|26245958\|ref\|NP_751997.1\| Transcriptional activatory protein caiF [Escherichia coli CFT073], gi\|2... gi\|117622325, gi... - gi\|117622325\|ref\|YP_851238.1\| DNA-binding transcriptional activator CaiF [Escherichia coli APEC O1],...	258.0	[0..1]	[131..36]
gi\|209747062, gi... - pir\|\|B64724 transcription activator caiF - Escherichia coli (strain K-12), pir\|\|E85484 transcription... gi\|15829291, gi\|... - gi\|15829291\|ref\|NP_308064.1\| transcriptional regulator of cai operon [Escherichia coli O157:H7 str. ... gi\|30039844, gi\|... - gi\|30061602\|ref\|NP_835773.1\| transcriptional regulator of cai operon [Shigella flexneri 2a str. 2457... gi\|24050231, gi\|... - gi\|24111480\|ref\|NP_705990.1\| transcriptional regulator of cai operon [Shigella flexneri 2a str. 301]... gi\|1786218, gi\|4... - gi\|49175992\|ref\|NP_414576.3\| transcriptional regulator of cai operon [Escherichia coli K12], gb\|AAC7... gi\|15829291, gi\|... - gi\|15829291\|ref\|NP_308064.1\| transcriptional regulator of cai operon [Escherichia coli O157:H7], gi\|... gi\|15799717, gi\|... - gi\|15799717\|ref\|NP_285729.1\| transcriptional regulator of cai operon [Escherichia coli O157:H7 EDL93... gi\|254037450, gi... - gi\|254037450\|ref\|ZP_04871527.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684055...	257.0	[0..1]	[131..36]
gi\|74310653, gi\|... - gi\|74310653\|ref\|YP_309072.1\| transcriptional regulator of cai operon [Shigella sonnei Ss046], gi\|738...	255.0	[0..1]	[131..36]
gi\|193070967, gi... - gi\|75234155\|ref\|ZP_00718559.1\| hypothetical protein EcolE1_01003916 [Escherichia coli E110019], gi\|1... gi\|191168902, gi... - gi\|75227864\|ref\|ZP_00714574.1\| hypothetical protein EcolB7_01003771 [Escherichia coli B7A], gi\|19116... gi\|75208890, gi\|... - gi\|75208890\|ref\|ZP_00709167.1\| hypothetical protein EcolB_01003896 [Escherichia coli B171], gi\|19442... gi\|75194255, gi\|... - gi\|75194255\|ref\|ZP_00704325.1\| hypothetical protein EcolH_01000029 [Escherichia coli HS], gi\|1571595... gi\|157077925, gi... - gi\|75189138\|ref\|ZP_00702405.1\| hypothetical protein EcolE_01002419 [Escherichia coli E24377A], gi\|15... gi\|209910485, gi... - gi\|209917226\|ref\|YP_002291310.1\| DNA-binding transcriptional activator CaiF [Escherichia coli SE11],... gi\|218359387, gi... - gi\|218552619\|ref\|YP_002385532.1\| DNA-binding transcriptional activator CaiF [Escherichia coli IAI1],... gi\|218693506, gi... - gi\|218693506\|ref\|YP_002401173.1\| DNA-binding transcriptional activator CaiF [Escherichia coli 55989]... gi\|193066219, gi... - gi\|75255689\|ref\|ZP_00727455.1\| hypothetical protein EcolE2_01004278 [Escherichia coli E22], gi\|19306...	255.0	[0..1]	[131..1]
gi\|75237173, gi\|... - gi\|75237173\|ref\|ZP_00721221.1\| hypothetical protein EcolF_01003976 [Escherichia coli F11], gi\|191174... gi\|161486339 - gi\|161486339\|ref\|NP_751997.2\| DNA-binding transcriptional activator CaiF [Escherichia coli CFT073] gi\|227837896, gi... - gi\|227885067\|ref\|ZP_04002872.1\| DNA-binding transcriptional activator CaiF [Escherichia coli 83972],... gi\|162138513 - gi\|162138513\|ref\|YP_539081.2\| DNA-binding transcriptional activator CaiF [Escherichia coli UTI89] gi\|218363743, gi... - gi\|218556974\|ref\|YP_002389887.1\| DNA-binding transcriptional activator CaiF [Escherichia coli S88], ... gi\|110341839, gi... - gi\|110640247\|ref\|YP_667975.1\| DNA-binding transcriptional activator CaiF [Escherichia coli 536], gi\|...	255.0	[0..1]	[131..1]
gi\|16501351, gi\|... - gi\|25359143\|pir\|\|AF0510 transcription activator CaiF STY0078 [imported] - Salmonella enterica subsp.... gi\|205271191, gi... - gi\|205351410\|ref\|YP_002225211.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica sub... gi\|16763458, gi\|... - gi\|16763458\|ref\|NP_459073.1\| DNA-binding transcriptional activator CaiF [Salmonella typhimurium LT2]... gi\|161361759, gi... - gi\|161612395\|ref\|YP_001586360.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica sub... gi\|213427509 - gi\|213427509\|ref\|ZP_03360259.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|213416822 - gi\|213416822\|ref\|ZP_03349966.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|29140611, gi\|... - gi\|29140611\|ref\|NP_803953.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subsp. ... gi\|213163015 - gi\|213163015\|ref\|ZP_03348725.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|16759061 - gi\|16759061\|ref\|NP_454678.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subsp. ... gi\|206707385, gi... - gi\|207855582\|ref\|YP_002242233.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica sub... lcl\|NC_016856.1_... - [gene=caiF] [protein=DNA-binding transcriptional activator CaiF] [protein_id=YP_005235714.1] [locati... gi\|238911127 - gi\|238911127\|ref\|ZP_04654964.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|214001272 - gi\|214001272\|ref\|ZP_03412007.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|213864975 - gi\|213864975\|ref\|ZP_03387094.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|213650151 - gi\|213650151\|ref\|ZP_03380204.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|213581920 - gi\|213581920\|ref\|ZP_03363746.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|62126265, gi\|... - gi\|62178632\|ref\|YP_215049.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subsp. ... gi\|224466435, gi... - gi\|224581908\|ref\|YP_002635706.1\| transcriptional activator CaiF [Salmonella enterica subsp. enterica...	240.0	[0..1]	[131..1]
gi\|56126597, gi\|... - gi\|56412340\|ref\|YP_149415.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subsp. ... gi\|197092752, gi... - gi\|197361277\|ref\|YP_002140912.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica sub...	239.0	[0..1]	[131..1]
gi\|82775436, gi\|... - gi\|82775436\|ref\|YP_401783.1\| transcriptional regulator of cai operon [Shigella dysenteriae Sd197], g...	232.0	[0..1]	[118..36]
gi\|27528364 - gi\|27528364\|emb\|CAD48584.1\| putative transcriptional regulatory protein [Proteus sp. LE138]	229.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCEGYVEKPL YLLIAEWMMA ENRWVIAREI SIHFDIEHSK AVNTLTYILS EVTEISCEVK  60
   61 MIPNKLEGRG CQCQRLVKVV DIDEQIYARL RNNSREKLVG VRKTPRIPAV PLTELNREQK 120
  121 WQMMLSKSMR R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits