YRC Public Data Repository - Protein Structure Prediction

Protein:	CAIB_ECOLI
Organism:	Escherichia coli
Length:	405 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAIB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|158140111, gi... - gi\|158319912\|ref\|YP_001512419.1\| Formyl-CoA transferase [Alkaliphilus oremlandii OhILAs], gi\|1581401...	488.0	[0..8]	[400..1]
gi\|73540552, gi\|... - gi\|73540552\|ref\|YP_295072.1\| L-carnitine dehydratase/bile acid-inducible protein F [Ralstonia eutrop...	475.0	[0..2]	[401..21]
gi\|94314067, gi\|... - gi\|94314067\|ref\|YP_587276.1\| L-carnitine dehydratase/bile acid-inducible protein F [Ralstonia metall...	474.0	[0..8]	[401..1]
gi\|145047488, gi... - gi\|145589082\|ref\|YP_001155679.1\| Formyl-CoA transferase [Polynucleobacter necessarius subsp. asymbio...	474.0	[0..3]	[401..16]
gi\|32414209, gi\|... - gi\|32414209\|ref\|XP_327584.1\| hypothetical protein [Neurospora crassa], gi\|28923749\|gb\|EAA32916.1\| hy... gi\|85068273 - gi\|85068273\|ref\|XP_962152.1\| hypothetical protein NCU07298 [Neurospora crassa OR74A]	473.0	[0..6]	[402..35]
gi\|108803096, gi... - gi\|68560590\|ref\|ZP_00599902.1\| Alpha-methylacyl-CoA racemase [Rubrobacter xylanophilus DSM 9941], gi...	473.0	[0..9]	[401..1]
gi\|119186953, gi... - gi\|90302869\|gb\|EAS32500.1\| hypothetical protein CIMG_03524 [Coccidioides immitis RS], gi\|119186953\|r...	472.0	[0..2]	[401..33]
gi\|113868728, gi... - gi\|113868728\|ref\|YP_727217.1\| acyl-CoA transferase/carnitine dehydratase [Ralstonia eutropha H16], g...	469.0	[0..9]	[401..1]
gi\|83721042, gi\|... - gi\|83721042\|ref\|YP_443177.1\| CAIB/BAIF family protein [Burkholderia thailandensis E264], gi\|83654867... gi\|167620353 - gi\|167620353\|ref\|ZP_02388984.1\| CAIB/BAIF family protein [Burkholderia thailandensis Bt4]	468.0	[0..9]	[401..1]

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Predicted Domain #1

Region A:
Residues: [1-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHLPMPKFG PLAGLRVVFS GIEIAGPFAG QMFAEWGAEV IWIENVAWAD TIRVQPNYPQ  60
   61 LSRRNLHALS LNIFKDEGRE AFLKLMETTD IFIEASKGPA FARRGITDEV LWQHNPKLVI 120
  121 AHLSGFGQYG TEEYTNLPAY NTIAQAFSGY LIQNGDVDQP MPAFPYTADY FSGLTATTAA 180
  181 LAALHKVRET GKGESIDIAM YEVMLRMGQY FMMDYFNGGE MCPRMSKGKD PYYAGCGLYK 240
  241 CADGYIVMEL VGITQIEECF KDIGLAHLLG TPEIPEGTQL IHRIECPYGP LVEEKLDAWL 300
  301 ATHTIAEVKE RFAELNIACA KVLTVPELES NPQYVARESI TQWQTMDGRT CKGPNIMPKF 360
  361 KNNPGQIWRG MPSHGMDTAA ILKNIGYSEN DIQELVSKGL AKVED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.09691
Match:	1xk6A
Description:	Crystal Structure- P1 form- of Escherichia coli Crotonobetainyl-CoA: carnitine CoA Transferase (CaiB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
alpha-methylacyl-CoA racemase activity	2.05221714417621	bayes_pls_golite062009
catalytic activity	0.613824351162579	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: