YRC Public Data Repository - Protein Structure Prediction

Protein:	BLR_ECOLI
Organism:	Escherichia coli
Length:	41 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BLR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|227885960, gi... - gi\|227885960\|ref\|ZP_04003765.1\| beta-lactam resistance protein [Escherichia coli 83972], gi\|22783705... gi\|237705566, gi... - gi\|237705566\|ref\|ZP_04536047.1\| beta-lactam resistance protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|110641747, gi... - gi\|110641747\|ref\|YP_669477.1\| beta-lactam resistance protein [Escherichia coli 536], gi\|110343339\|gb... gi\|191173465, gi... - gi\|191173465\|ref\|ZP_03034993.1\| beta-lactam resistance protein [Escherichia coli F11], gi\|190906307\|...	72.0	[0..1]	[41..11]
gi\|254592641, gi... - gi\|254793241\|ref\|YP_003078078.1\| beta-lactam resistance membrane protein [Escherichia coli O157:H7 s... gi\|209769702, gi... - pir\|\|E90920 beta-lactam resistance protein [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|13361800, gi\|... - gi\|15831587\|ref\|NP_310360.1\| beta-lactam resistance protein [Escherichia coli O157:H7], gi\|13361800\|... gi\|195939012 - gi\|195939012\|ref\|ZP_03084394.1\| beta-lactam resistance protein [Escherichia coli O157:H7 str. EC4024... gi\|13361800, gi\|... - gi\|15831587\|ref\|NP_310360.1\| beta-lactam resistance protein [Escherichia coli O157:H7 str. Sakai], g... gi\|91210836, gi\|... - gi\|91210836\|ref\|YP_540822.1\| putative beta-lactam resistance protein [Escherichia coli UTI89], gi\|91...	71.0	[0..1]	[41..1]

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Predicted Domain #1

Region A:
Residues: [1-41]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLIELTGW IVLVVSVILL GVASHIDNYQ PPEQSASVQH K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits