YRC Public Data Repository - Protein Structure Prediction

Protein:	BIOC_ECOLI
Organism:	Escherichia coli
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIOC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90324431, gi\|... - gi\|90414523\|ref\|ZP_01222498.1\| putative biotin synthesis protein BioC [Photobacterium profundum 3TCK...	191.0	[0..3]	[251..22]
gi\|91071380, gi\|... - gi\|91209806\|ref\|YP_539792.1\| biotin biosynthesis protein BioC [Escherichia coli UTI89], gi\|91071380\|... gi\|115512084, gi... - gi\|117622960\|ref\|YP_851873.1\| biotin biosynthesis protein BioC [Escherichia coli APEC O1], gi\|115512... gi\|237707266, gi... - gi\|237707266\|ref\|ZP_04537747.1\| biotin synthesis protein BioC [Escherichia sp. 3_2_53FAA], gi\|226898...	189.0	[0..1]	[251..14]
gi\|90331572, gi\|... - gi\|90416819\|ref\|ZP_01224749.1\| probable biotin synthesis protein BioC [marine gamma proteobacterium ... gi\|90416819\|ref\|... - probable biotin synthesis protein BioC [marine gamma proteobacterium HTCC2207]	189.0	[0..4]	[250..276]
gi\|37525438, gi\|... - gi\|37525438\|ref\|NP_928782.1\| biotin synthesis protein [Photorhabdus luminescens subsp. laumondii TTO...	188.0	[0..5]	[251..9]
gi\|78364606, gi\|... - gi\|78486320\|ref\|YP_392245.1\| biotin biosynthesis protein BioC [Thiomicrospira crunogena XCL-2], gi\|7...	188.0	[0..1]	[249..1]
gi\|86147107, gi\|... - gi\|86147107\|ref\|ZP_01065424.1\| biotin synthesis protein BioC [Vibrio sp. MED222], gi\|85835172\|gb\|EAQ...	187.0	[0..5]	[249..14]
gi\|168750322, gi... - gi\|188015479\|gb\|EDU53601.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4113],... gi\|208732176, gi... - gi\|208815528\|ref\|ZP_03256707.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC40... gi\|208738048, gi... - gi\|208822563\|ref\|ZP_03262882.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC40... gi\|254591371, gi... - gi\|254791971\|ref\|YP_003076808.1\| predicted methltransferase, enzyme of biotin synthesis [Escherichia... gi\|15830109, gi\|... - gi\|15830109\|ref\|NP_308882.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. Sakai],... gi\|209161055, gi... - gi\|209399655\|ref\|YP_002269446.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4... gi\|217321503, gi... - gi\|217325282\|ref\|ZP_03441366.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. TW14... gi\|168779318, gi... - gi\|189002948\|gb\|EDU71934.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4076],... gi\|168786988, gi... - gi\|189372979\|gb\|EDU91395.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC869], ... gi\|189376943, gi... - gi\|189376943\|gb\|EDU95359.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC508], ... gi\|195936815 - gi\|195936815\|ref\|ZP_03082197.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC40... gi\|15830109, gi\|... - gi\|15830109\|ref\|NP_308882.1\| BioC [Escherichia coli O157:H7], gi\|13360314\|dbj\|BAB34278.1\| putative e... gi\|168757118, gi... - gi\|189355823\|gb\|EDU74242.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4401],... gi\|209776112, gi... - pir\|\|H85585 hypothetical protein bioC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189366474, gi... - gi\|189366474\|gb\|EDU84890.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4501],... gi\|189363499, gi... - gi\|189363499\|gb\|EDU81918.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4486],... gi\|15800528, gi\|... - gi\|15800528\|ref\|NP_286540.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 EDL933], gi\|... gi\|168776425, gi... - gi\|187768141\|gb\|EDU31985.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4196],...	187.0	[0..1]	[251..1]
BIOC_PECAS - Malonyl-[acyl-carrier protein] O-methyltransferase OS=Pectobacterium atrosepticum (strain SCRI 1043 ... BIOC_ERWCT - Malonyl-CoA O-methyltransferase BioC OS=Erwinia carotovora subsp. atroseptica GN=bioC PE=3 SV=1	187.0	[0..3]	[251..5]
gi\|46913930, gi\|... - gi\|54309494\|ref\|YP_130514.1\| putative biotin synthesis protein BioC [Photobacterium profundum SS9], ...	187.0	[0..4]	[251..23]
gi\|84394183, gi\|... - gi\|84394183\|ref\|ZP_00992914.1\| biotin synthesis protein BioC [Vibrio splendidus 12B01], gi\|84375203\|...	186.0	[0..2]	[249..11]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVNKQAIA AAFGRAAAHY EQHADLQRQS ADALLAMLPQ RKYTHVLDAG CGPGWMSRHW  60
   61 RERHAQVTAL DLSPPMLVQA RQKDAADHYL AGDIESLPLA TATFDLAWSN LAVQWCGNLS 120
  121 TALRELYRVV RPKGVVAFTT LVQGSLPELH QAWQAVDERP HANRFLPPDE IEQSLNGVHY 180
  181 QHHIQPITLW FDDALSAMRS LKGIGATHLH EGRDPRILTR SQLQRLQLAW PQQQGRYPLT 240
  241 YHLFLGVIAR E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	2p35A
Description:	No description for 2p35A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits