YRC Public Data Repository - Protein Structure Prediction

Protein:	BDM_ECOLI
Organism:	Escherichia coli
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BDM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|81245480, gi\|... - gi\|82544069\|ref\|YP_408016.1\| hypothetical protein SBO_1576 [Shigella boydii Sb227], gi\|81245480\|gb\|A... gi\|226900218, gi... - gi\|237705461\|ref\|ZP_04535942.1\| biofilm-dependent modulation protein [Escherichia sp. 3_2_53FAA], gi... gi\|117623717, gi... - gi\|117623717\|ref\|YP_852630.1\| biofilm-dependent modulation protein [Escherichia coli APEC O1], gi\|11... gi\|209770648, gi... - gi\|25497833\|pir\|\|D85728 hypothetical protein Z2229 [imported] - Escherichia coli (strain O157:H7, s... gi\|26108173, gi\|... - gi\|26247771\|ref\|NP_753811.1\| Bdm protein [Escherichia coli CFT073], gi\|26108173\|gb\|AAN80373.1\|AE0167... gi\|13361551 - gi\|13361551\|dbj\|BAB35508.1\| hypothetical protein [Escherichia coli O157:H7] gi\|12515200, gi\|... - gi\|15801656\|ref\|NP_287674.1\| hypothetical protein Z2229 [Escherichia coli O157:H7 EDL933], gi\|125152... gi\|13361551 - gi\|13361551\|dbj\|BAB35508.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|91210722, gi\|... - gi\|91210722\|ref\|YP_540708.1\| hypothetical protein UTI89_C1699 [Escherichia coli UTI89], gi\|91072296\|...	135.0	[0..1]	[71..22]
gi\|7466180 - gi\|7466180\|pir\|\|D64901 hypothetical protein b1481 - Escherichia coli (strain K-12) gi\|49176116, gi\|... - gi\|49176116\|ref\|NP_415998.3\| biofilm-dependent modulation protein [Escherichia coli K12], gb\|AAC7455...	134.0	[0..1]	[71..22]
gi\|227836882, gi... - gi\|227886125\|ref\|ZP_04003930.1\| biofilm-dependent modulation protein [Escherichia coli 83972], gi\|22... gi\|254793027, gi... - gi\|254793027\|ref\|YP_003077864.1\| biofilm-dependent modulation protein [Escherichia coli O157:H7 str.... gi\|189368154, gi... - gi\|189368154\|gb\|EDU86570.1\| protein bdm [Escherichia coli O157:H7 str. EC4501], gi\|168761422\|ref\|ZP_... gi\|189361928, gi... - gi\|189361928\|gb\|EDU80347.1\| protein bdm [Escherichia coli O157:H7 str. EC4486], gi\|168768981\|ref\|ZP_... gi\|187770160, gi... - gi\|187770160\|gb\|EDU34004.1\| protein bdm [Escherichia coli O157:H7 str. EC4196], gi\|168774283\|ref\|ZP_... gi\|168781460, gi... - gi\|189000933\|gb\|EDU69919.1\| protein bdm [Escherichia coli O157:H7 str. EC4076], gi\|168781460\|ref\|ZP_... gi\|168788459, gi... - gi\|189371767\|gb\|EDU90183.1\| protein bdm [Escherichia coli O157:H7 str. EC869], gi\|168788459\|ref\|ZP_0... gi\|168799385, gi... - gi\|189378126\|gb\|EDU96542.1\| protein bdm [Escherichia coli O157:H7 str. EC508], gi\|168799385\|ref\|ZP_0... gi\|169755116, gi... - gi\|170020188\|ref\|YP_001725142.1\| biofilm-dependent modulation protein [Escherichia coli ATCC 8739], ... gi\|170683795, gi... - gi\|170683795\|ref\|YP_001743747.1\| protein bdm [Escherichia coli SMS-3-5], gi\|170521513\|gb\|ACB19691.1\|... gi\|161367609 - gi\|161367609\|ref\|NP_287674.2\| biofilm-dependent modulation protein [Escherichia coli O157:H7 EDL933] BDM_ECOL6 - Protein bdm homolog OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=bdm PE=4 SV=1 gi\|161984935 - gi\|161984935\|ref\|YP_408016.2\| biofilm-dependent modulation protein [Shigella boydii Sb227] gi\|162138441 - gi\|162138441\|ref\|YP_540708.2\| biofilm-dependent modulation protein [Escherichia coli UTI89] gi\|168748913, gi... - gi\|188016712\|gb\|EDU54834.1\| protein bdm [Escherichia coli O157:H7 str. EC4113], gi\|168748913\|ref\|ZP_... gi\|189356708, gi... - gi\|189356708\|gb\|EDU75127.1\| protein bdm [Escherichia coli O157:H7 str. EC4401], gi\|168756130\|ref\|ZP_... gi\|218356394, gi... - gi\|218548853\|ref\|YP_002382644.1\| biofilm-dependent modulation protein [Escherichia fergusonii ATCC 3... gi\|218554006, gi... - gi\|218554006\|ref\|YP_002386919.1\| biofilm-dependent modulation protein [Escherichia coli IAI1], gi\|21... gi\|218558402, gi... - gi\|218558402\|ref\|YP_002391315.1\| biofilm-dependent modulation protein [Escherichia coli S88], gi\|218... gi\|218426964, gi... - gi\|218689400\|ref\|YP_002397612.1\| biofilm-dependent modulation protein [Escherichia coli ED1a], gi\|21... gi\|218351750, gi... - gi\|218695018\|ref\|YP_002402685.1\| biofilm-dependent modulation protein [Escherichia coli 55989], gi\|2... gi\|218432049, gi... - gi\|218704952\|ref\|YP_002412471.1\| biofilm-dependent modulation protein [Escherichia coli UMN026], gi\|... gi\|220065654 - gi\|220065654\|gb\|EED43293.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componen... gi\|38703986 - gi\|38703986\|ref\|NP_310112.2\| biofilm-dependent modulation protein [Escherichia coli O157:H7 str. Sak... gi\|195936974 - gi\|195936974\|ref\|ZP_03082356.1\| biofilm-dependent modulation protein [Escherichia coli O157:H7 str. ... BDM_ECOL6 - Protein bdm homolog OS=Escherichia coli O6 GN=bdm PE=4 SV=1 gi\|110641661, gi... - gi\|110641661\|ref\|YP_669391.1\| biofilm-dependent modulation protein [Escherichia coli 536], gi\|110343... gi\|208724487, gi... - gi\|208810981\|ref\|ZP_03252814.1\| protein bdm [Escherichia coli O157:H7 str. EC4206], gi\|208724487\|gb\|... BDM_ECO57 - Protein bdm homolog OS=Escherichia coli O157:H7 GN=bdm PE=4 SV=1 gi\|208816035, gi... - gi\|208816035\|ref\|ZP_03257214.1\| protein bdm [Escherichia coli O157:H7 str. EC4045], gi\|208732683\|gb\|... gi\|124526258, gi... - gi\|124526258\|ref\|ZP_01698263.1\| conserved hypothetical protein [Escherichia coli B], gi\|124502362\|gb... gi\|208820711, gi... - gi\|208820711\|ref\|ZP_03261031.1\| protein bdm [Escherichia coli O157:H7 str. EC4042], gi\|208740834\|gb\|... gi\|209159115, gi... - gi\|209397715\|ref\|YP_002270483.1\| protein bdm [Escherichia coli O157:H7 str. EC4115], gi\|209159115\|gb... gi\|209918761, gi... - gi\|209918761\|ref\|YP_002292845.1\| biofilm-dependent modulation protein [Escherichia coli SE11], gi\|20... gi\|215264779, gi... - gi\|215486707\|ref\|YP_002329138.1\| biofilm-dependent modulation protein [Escherichia coli O127:H6 str.... gi\|217317592, gi... - gi\|217329153\|ref\|ZP_03445233.1\| protein bdm [Escherichia coli O157:H7 str. TW14588], gi\|217317592\|gb... gi\|75257747, gi\|... - gi\|75257747\|ref\|ZP_00729232.1\| hypothetical protein EcolE2_01002421 [Escherichia coli E22], gi\|19306... gi\|190906872, gi... - gi\|75240173\|ref\|ZP_00724125.1\| hypothetical protein EcolF_01002760 [Escherichia coli F11], gi\|191172... gi\|193066978, gi... - gi\|75239900\|ref\|ZP_00723861.1\| hypothetical protein EcolE1_01000148 [Escherichia coli E110019], gi\|1... gi\|191165097, gi... - gi\|75231767\|ref\|ZP_00718108.1\| hypothetical protein EcolB7_01000081 [Escherichia coli B7A], gi\|19116... gi\|194425959, gi... - gi\|75212852\|ref\|ZP_00712850.1\| hypothetical protein EcolB_01000233 [Escherichia coli B171], gi\|19442... gi\|157078889, gi... - gi\|75190523\|ref\|ZP_00703790.1\| hypothetical protein EcolE_01003828 [Escherichia coli E24377A], gi\|15... gi\|187427534, gi... - gi\|75178546\|ref\|ZP_00698592.1\| hypothetical protein SboyB_01001467 [Shigella boydii BS512], gi\|18773...	131.0	[0..1]	[71..1]
gi\|194419795, gi... - gi\|83570863\|ref\|ZP_00922305.1\| hypothetical protein Sdys1_01000691 [Shigella dysenteriae 1012], gi\|1...	129.0	[0..1]	[71..1]
BDM_SALTY - Protein bdm homolog OS=Salmonella typhimurium GN=bdm PE=4 SV=1 gi\|56127746, gi\|... - gi\|56413489\|ref\|YP_150564.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=yddX] [protein=biofilm-dependent modulation protein] [protein_id=YP_005237454.1] [location=165... gi\|161613996, gi... - gi\|161613996\|ref\|YP_001587961.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. en... gi\|160864680, gi... - gi\|161503333\|ref\|YP_001570445.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ar... gi\|205328943, gi... - gi\|205328943\|gb\|EDZ15707.1\| protein bdm [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- st... gi\|205324991, gi... - gi\|205324991\|gb\|EDZ12830.1\| protein bdm [Salmonella enterica subsp. enterica serovar Saintpaul str. ... BDM_SALTI - Protein bdm homolog OS=Salmonella typhi GN=bdm PE=4 SV=1 gi\|16760309 - gi\|16760309\|ref\|NP_455926.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. enteri... gi\|238911799 - gi\|238911799\|ref\|ZP_04655636.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... BDM_SALTY - Protein bdm homolog OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=bdm PE=4 SV=1 gi\|29141926, gi\|... - gi\|29141926\|ref\|NP_805268.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. enteri... gi\|197937596, gi... - gi\|198243080\|ref\|YP_002215582.1\| protein bdm [Salmonella enterica subsp. enterica serovar Dublin str... gi\|197362414, gi... - gi\|197362414\|ref\|YP_002142051.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. en... gi\|204322956, gi... - gi\|204927614\|ref\|ZP_03218815.1\| protein bdm [Salmonella enterica subsp. enterica serovar Javiana str... gi\|199602312, gi... - gi\|200389867\|ref\|ZP_03216478.1\| protein bdm [Salmonella enterica subsp. enterica serovar Virchow str... gi\|194711447, gi... - gi\|194735945\|ref\|YP_002114589.1\| protein bdm [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|194457436, gi... - gi\|194471072\|ref\|ZP_03077056.1\| protein bdm [Salmonella enterica subsp. enterica serovar Kentucky st... gi\|197243348, gi... - gi\|197265093\|ref\|ZP_03165167.1\| protein bdm [Salmonella enterica subsp. enterica serovar Saintpaul s... gi\|197211309, gi... - gi\|197247606\|ref\|YP_002146473.1\| protein bdm [Salmonella enterica subsp. enterica serovar Agona str.... gi\|168819333, gi... - gi\|205343818\|gb\|EDZ30582.1\| protein bdm [Salmonella enterica subsp. enterica serovar Weltevreden str... gi\|195634355, gi... - gi\|195634355\|gb\|EDX52707.1\| protein bdm [Salmonella enterica subsp. enterica serovar Newport str. SL... gi\|194408303, gi... - gi\|194449999\|ref\|YP_002045605.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. en... gi\|194404139, gi... - gi\|194445476\|ref\|YP_002040812.1\| protein bdm [Salmonella enterica subsp. enterica serovar Newport st... gi\|168235668, gi... - gi\|197291139\|gb\|EDY30492.1\| protein bdm [Salmonella enterica subsp. enterica serovar Schwarzengrund ... gi\|205335498, gi... - gi\|205335498\|gb\|EDZ22262.1\| protein bdm [Salmonella enterica subsp. enterica serovar Kentucky str. C... BDM_SALTY - Protein bdm homolog OS=Salmonella typhimurium GN=bdm PE=4 SV=1 gi\|168260259, gi... - gi\|205350962\|gb\|EDZ37593.1\| protein bdm [Salmonella enterica subsp. enterica serovar Hadar str. RI_0... BDM_SALTI - Protein bdm homolog OS=Salmonella typhi GN=bdm PE=4 SV=1 gi\|205339294, gi... - gi\|205339294\|gb\|EDZ26058.1\| protein bdm [Salmonella enterica subsp. enterica serovar Heidelberg str.... gi\|213980180 - gi\|213980180\|ref\|ZP_03407439.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213850346 - gi\|213850346\|ref\|ZP_03381244.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|224583942, gi... - gi\|224583942\|ref\|YP_002637740.1\| hypothetical protein SPC_2174 [Salmonella enterica subsp. enterica ... gi\|62127768, gi\|... - gi\|62180135\|ref\|YP_216552.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. enteri... gi\|214001410 - gi\|214001410\|ref\|ZP_03412145.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213580043 - gi\|213580043\|ref\|ZP_03361869.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213426465 - gi\|213426465\|ref\|ZP_03359215.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213649197 - gi\|213649197\|ref\|ZP_03379250.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213615610 - gi\|213615610\|ref\|ZP_03371436.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|207856941, gi... - gi\|207856941\|ref\|YP_002243592.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. en... gi\|205272531, gi... - gi\|205352750\|ref\|YP_002226551.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. en... gi\|213417482 - gi\|213417482\|ref\|ZP_03350624.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213052167 - gi\|213052167\|ref\|ZP_03345045.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent...	128.0	[0..1]	[71..1]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTYYQAENS TAEPALVNAI EQGLRAQHGV VTEDDILMEL TKWVEASDND ILSDIYQQTI  60
   61 NYVVSGQHPT L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.889	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits