YRC Public Data Repository - Protein Structure Prediction

Protein:	BCCP_ECOLI
Organism:	Escherichia coli
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCCP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75228621 - gi\|75228621\|ref\|ZP_00715246.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli B7A]	156.0	[0..1]	[156..1]
gi\|229350205, gi... - gi\|229512695\|ref\|ZP_04402163.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229346649, gi... - gi\|229516223\|ref\|ZP_04405671.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|227116705, gi... - gi\|227116705\|ref\|YP_002818601.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cho... gi\|229506906, gi... - gi\|229506906\|ref\|ZP_04396414.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229335216, gi... - gi\|229527208\|ref\|ZP_04416601.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229369074, gi... - gi\|229606419\|ref\|YP_002877067.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio c... gi\|121729646, gi... - gi\|121729646\|ref\|ZP_01682123.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|229341869, gi... - gi\|229520984\|ref\|ZP_04410405.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229524744, gi... - gi\|229524744\|ref\|ZP_04414149.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229509279, gi... - gi\|229509279\|ref\|ZP_04398762.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|254851431, gi... - gi\|254851431\|ref\|ZP_05240781.1\| acetyl-CoA carboxylase [Vibrio cholerae MO10], gi\|254847136\|gb\|EET25... gi\|9654707, gi\|1... - gi\|9654707\|gb\|AAF93470.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cholerae O... gi\|11354377 - pir\|\|G82341 acetyl-CoA carboxylase, biotin carboxyl carrier protein VC0296 [imported] - Vibrio chole... gi\|254286232, gi... - gi\|254286232\|ref\|ZP_04961191.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|148873102, gi... - gi\|153831417\|ref\|ZP_01984084.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|153827378, gi... - gi\|153827378\|ref\|ZP_01980045.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|227080510, gi... - gi\|227080510\|ref\|YP_002809061.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cho...	153.0	[0..1]	[156..44]
gi\|82778564, gi\|... - gi\|82778564\|ref\|YP_404913.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Shigell...	150.0	[0..1]	[156..1]
gi\|36787357, gi\|... - gi\|37527921\|ref\|NP_931266.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Photorh...	149.0	[0..1]	[156..1]
gi\|53753288, gi\|... - gi\|54293456\|ref\|YP_125871.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein [Legionella pneu...	146.0	[0..1]	[156..1]
gi\|53750283, gi\|... - gi\|54296498\|ref\|YP_122867.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein [Legionella pneu...	146.0	[0..1]	[156..1]
gi\|52840708, gi\|... - gi\|52840708\|ref\|YP_094507.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein [Legionella pneu...	145.0	[0..1]	[156..1]
gi\|62129520, gi\|... - gi\|62181887\|ref\|YP_218304.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salmone... gi\|56415306, gi\|... - gi\|56415306\|ref\|YP_152381.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salmone... gi\|161616401, gi... - gi\|161616401\|ref\|YP_001590366.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Sal... gi\|197263867, gi... - gi\|197263867\|ref\|ZP_03163941.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella ... gi\|197213227, gi... - gi\|197249524\|ref\|YP_002148303.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella... gi\|29143627, gi\|... - gi\|29143627\|ref\|NP_806969.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salmone... gi\|194470069, gi... - gi\|194470069\|ref\|ZP_03076053.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella ... gi\|16762138 - gi\|16762138\|ref\|NP_457755.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salmone... gi\|194449095, gi... - gi\|194449095\|ref\|YP_002047407.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Sal... gi\|205354280, gi... - gi\|205354280\|ref\|YP_002228081.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Sal... gi\|199606278, gi... - gi\|200389180\|ref\|ZP_03215792.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella ... gi\|198246111, gi... - gi\|198246111\|ref\|YP_002217348.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella... gi\|197095713, gi... - gi\|197364236\|ref\|YP_002143873.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Sal... gi\|168245218, gi... - gi\|205336033\|gb\|EDZ22797.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella ente... lcl\|NC_016856.1_... - [gene=accB] [protein=acetyl-CoA carboxylase biotin carboxyl carrier protein subunit] [protein_id=YP_... gi\|168233965, gi... - gi\|205332026\|gb\|EDZ18790.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella ente... gi\|167993966, gi... - gi\|205328089\|gb\|EDZ14853.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella ente... gi\|167552913, gi... - gi\|205322529\|gb\|EDZ10368.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella ente... gi\|194442611, gi... - gi\|194442611\|ref\|YP_002042634.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella... gi\|205340916, gi... - gi\|205340916\|gb\|EDZ27680.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella ente... gi\|195633603, gi... - gi\|195633603\|gb\|EDX52017.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella ente... gi\|205348347, gi... - gi\|205348347\|gb\|EDZ34978.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Salmonella ente... gi\|224469705, gi... - gi\|224585177\|ref\|YP_002638976.1\| acetyl-CoA carboxylase [Salmonella enterica subsp. enterica serovar... gi\|213428304 - gi\|213428304\|ref\|ZP_03361054.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salm... gi\|213051966 - gi\|213051966\|ref\|ZP_03344844.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salm... gi\|213028621 - gi\|213028621\|ref\|ZP_03343068.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salm... gi\|207858627, gi... - gi\|207858627\|ref\|YP_002245278.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Sal... gi\|25296264, gi\|... - gi\|25296264\|pir\|\|AH0912 biotin carboxyl carrier protein [imported] - Salmonella enterica subsp. ente... gi\|214002735 - gi\|214002735\|ref\|ZP_03413470.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salm... gi\|16421940, gi\|... - gi\|16766674\|ref\|NP_462289.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salmone... gi\|213647013 - gi\|213647013\|ref\|ZP_03377066.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salm... gi\|213618705 - gi\|213618705\|ref\|ZP_03372531.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salm... gi\|213584322 - gi\|213584322\|ref\|ZP_03366148.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Salm...	144.0	[0..1]	[156..1]
gi\|238797917, gi... - gi\|77961454\|ref\|ZP_00825291.1\| COG0511: Biotin carboxyl carrier protein [Yersinia mollaretii ATCC 43...	143.0	[0..1]	[156..1]
gi\|77630572 - gi\|77630572\|ref\|ZP_00793158.1\| COG0511: Biotin carboxyl carrier protein [Yersinia pseudotuberculosis...	142.0	[0..1]	[156..16]

Back

Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIRKIKKLI ELVEESGISE LEISEGEESV RISRAAPAAS FPVMQQAYAA PMMQQPAQSN  60
   61 AAAPATVPSM EAPAAAEISG HIVRSPMVGT FYRTPSPDAK AFIEVGQKVN VGDTLCIVEA 120
  121 MKMMNQIEAD KSGTVKAILV ESGQPVEFDE PLVVIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1a6xA
Description:	STRUCTURE OF THE APO-BIOTIN CARBOXYL CARRIER PROTEIN (APO-BCCP87) OF ESCHERICHIA COLI ACETYL-COA CARBOXYLASE, NMR, 49 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.860940353499128	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: