YRC Public Data Repository - Protein Structure Prediction

Protein:	BASR_ECOLI
Organism:	Escherichia coli
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BASR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	255.0	[0..2]	[222..4]
gi\|56910719, gi\|... - gi\|56964476\|ref\|YP_176207.1\| two-component response regulator of alkaline phosphatase synthesis [Bac...	246.0	[0..2]	[222..4]
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	245.0	[0..2]	[217..5]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	244.0	[0..2]	[218..6]
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	244.0	[0..2]	[219..106]
gi\|229497231, gi... - gi\|229497231\|ref\|ZP_04390932.1\| two component transcriptional regulator, winged helix family [Geobac... gi\|56421267, gi\|... - gi\|56421267\|ref\|YP_148585.1\| two-component response regulator (phosphate regulation) [Geobacillus ka... gi\|221088131, gi... - gi\|221088131\|ref\|ZP_03557664.1\| two component transcriptional regulator, winged helix family [Geobac...	243.0	[0..2]	[219..4]
gi\|47556738, gi\|... - gi\|47566185\|ref\|ZP_00237213.1\| two-component response regulator [Bacillus cereus G9241], gi\|47556738...	243.0	[0..2]	[217..5]
gi\|82402957, gi\|... - gi\|82499061\|ref\|ZP_00884513.1\| Response regulator receiver [Caldicellulosiruptor saccharolyticus DSM...	243.0	[0..1]	[217..1]
gi\|89084904, gi\|... - gi\|89100385\|ref\|ZP_01173249.1\| PhoP [Bacillus sp. NRRL B-14911], gi\|89084904\|gb\|EAR64041.1\| PhoP [Ba...	242.0	[0..2]	[219..4]
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	242.0	[0..2]	[221..13]

Back

Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILIVEDDT LLLQGLILAA QTEGYACDSV TTARMAEQSL EAGHYSLVVL DLGLPDEDGL  60
   61 HFLARIRQKK YTLPVLILTA RDTLTDKIAG LDVGADDYLV KPFALEELHA RIRALLRRHN 120
  121 NQGESELIVG NLTLNMGRRQ VWMGGEELIL TPKEYALLSR LMLKAGSPVH REILYNDIYN 180
  181 WDNEPSTNTL EVHIHNLRDK VGKARIRTVR GFGYMLVANE EN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.30103
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits