YRC Public Data Repository - Protein Structure Prediction

Protein:	BAER_ECOLI
Organism:	Escherichia coli
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAER_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	270.0	[0..10]	[238..11]
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	268.0	[0..10]	[238..3]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	267.0	[0..11]	[233..5]
gi\|82403020, gi\|... - gi\|82499006\|ref\|ZP_00884459.1\| Response regulator receiver [Caldicellulosiruptor saccharolyticus DSM...	262.0	[0..9]	[236..2]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	262.0	[0..10]	[235..2]
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	261.0	[0..9]	[235..103]
gi\|114566483, gi... - gi\|114566483\|ref\|YP_753637.1\| response regulator receiver protein [Syntrophomonas wolfei subsp. wolf...	261.0	[0..9]	[239..2]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	261.0	[0..9]	[233..2]
gi\|229181712, gi... - gi\|229181712\|ref\|ZP_04309035.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|218160803, gi... - gi\|218232846\|ref\|YP_002370241.1\| DNA-binding response regulator YycF [Bacillus cereus B4264], gi\|218... gi\|228629853, gi... - gi\|229153624\|ref\|ZP_04281801.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228797964, gi... - gi\|228961729\|ref\|ZP_04123333.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|206970303, gi... - gi\|206970303\|ref\|ZP_03231256.1\| DNA-binding response regulator YycF [Bacillus cereus AH1134], gi\|206... gi\|29899052, gi\|... - gi\|30023491\|ref\|NP_835122.1\| two-component response regulator yycF [Bacillus cereus ATCC 14579], gi\|...	261.0	[0..11]	[238..4]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELPIDENT PRILIVEDEP KLGQLLIDYL RAASYAPTLI SHGDQVLPYV RQTPPDLILL  60
   61 DLMLPGTDGL TLCREIRRFS DIPIVMVTAK IEEIDRLLGL EIGADDYICK PYSPREVVAR 120
  121 VKTILRRCKP QRELQQQDAE SPLIIDEGRF QASWRGKMLD LTPAEFRLLK TLSHEPGKVF 180
  181 SREQLLNHLY DDYRVVTDRT IDSHIKNLRR KLESLDAEQS FIRAVYGVGY RWEADACRIV 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.09691
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits