YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPD_SORBI
Organism:	Sorghum bicolor
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPD_SORBI.

Description	E-value	Query Range	Subject Range
gi\|57108786 - gi\|57108786\|ref\|XP_535587.1\| PREDICTED: similar to ATP synthase O subunit, mitochondrial precursor (...	187.0	[0..28]	[241..2]
ATPD_TOBAC - ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1	182.0	[0..1]	[247..1]
ATPO_PIG - ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1	181.0	[0..28]	[241..2]
ATPO_IPOBA - ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1	180.0	[0..3]	[241..6]
ATP5O - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit gi\|55655775 - gi\|55655775\|ref\|XP_531443.1\| PREDICTED: mitochondrial ATP synthase, O subunit [Pan troglodytes]	179.0	[0..28]	[241..2]
gi\|61365630, gi\|... - gi\|61365630\|gb\|AAX42738.1\| ATP synthase H+ transporting mitochondrial F1 complex O subunit [syntheti...	179.0	[0..28]	[243..2]
ATPO_PONPY - ATP synthase subunit O, mitochondrial precursor - Pongo pygmaeus (Orangutan) ATPO_PONAB - ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1	179.0	[0..28]	[242..2]
ATPO_BOVIN - ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2	179.0	[0..28]	[241..2]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALRLASFT LRPAAAAAAS ASSGATPAAP RSASFARAAR GLPSLRLAPP RRRGDLVRPR  60
   61 AEAAADSYAS ALSEVAVENG TLEQTVSDLE KLQKIFADET VAEFFDNPTV PREEKTALID 120
  121 EIAKSYELQP HVVNFINVVV DNFRATILPE IVVEFENIFN SLTGTEVATV TSVVQLESQD 180
  181 LAQIAQHVQK MTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	2bo5A
Description:	Bovine oligomycin sensitivity conferral protein N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [194-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKNVRLKTQL DPELIAGFTV QYGRDGSSLI DMSVRKQIEE ITSEFELPDV PLEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits