YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPA_ECOLI
Organism:	Escherichia coli
Length:	513 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPA_ECOLI.

Description	E-value	Query Range	Subject Range
ATPA_CARHZ - ATP synthase subunit alpha OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-...	648.0	[0..1]	[512..1]
ATPA_CUPMC - ATP synthase subunit alpha OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 ...	636.0	[0..1]	[513..1]
gi\|33329385, gi\|... - gi\|33329385\|gb\|AAQ10088.1\| ATP synthase subunit alpha [Bacillus sp. TA2.A1], gi\|158430152\|pdb\|2QE7\|C...	633.0	[0..1]	[512..1]
ATPA1_NITMU - ATP synthase subunit alpha 1 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=atpA1 ...	629.0	[0..1]	[513..1]
gi\|86606753 - gi\|86606753\|ref\|YP_475516.1\| ATP synthase F1, alpha subunit [Cyanobacteria bacterium Yellowstone A-P... ATPA_SYNJA - ATP synthase subunit alpha OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpA PE=3 SV=1	629.0	[0..2]	[511..3]
ATPA_THEEB - ATP synthase subunit alpha OS=Thermosynechococcus elongatus (strain BP-1) GN=atpA PE=1 SV=1 ATPA_SYNEL - ATP synthase subunit alpha OS=Synechococcus elongatus GN=atpA PE=3 SV=1	629.0	[0..1]	[512..2]
gi\|77964179 - gi\|77964179\|gb\|ABB13424.1\| ATP synthase subunit alpha [Clostridium paradoxum]	629.0	[0..1]	[511..1]
ATPA_SYNJB - ATP synthase subunit alpha OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=atpA PE=3 SV=1 gi\|86610100 - gi\|86610100\|ref\|YP_478862.1\| ATP synthase F1, alpha subunit [Cyanobacteria bacterium Yellowstone B-P...	628.0	[0..2]	[511..3]
gi\|114537937, gi... - gi\|114706545\|ref\|ZP_01439446.1\| F0F1 ATP synthase subunit alpha [Fulvimarina pelagi HTCC2506], gi\|11...	627.0	[0..1]	[512..1]
ATPA_RHIME - ATP synthase subunit alpha OS=Rhizobium meliloti GN=atpA PE=3 SV=1 ATPA_RHIME - ATP synthase subunit alpha OS=Rhizobium meliloti (strain 1021) GN=atpA PE=3 SV=1	627.0	[0..1]	[512..1]

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Predicted Domain #1

Region A:
Residues: [1-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLNSTEISE LIKQRIAQFN VVSEAHNEGT IVSVSDGVIR IHGLADCMQG EMISLPGNRY  60
   61 AIALNLERDS VGAVVMGPYA DLAEGMKVKC TGRILEVPVG RGLLGRVVNT LGAPIDGKGP 120
  121 LDHDGFSAVE AIAPGVIERQ SVDQPVQTGY KAVDSMIPIG RGQRELIIGD RQTGKTALAI 180
  181 DAIINQRDSG IKCIYVAIGQ KASTISNVVR KLEEHGALAN TIVVVATASE SAALQYLAPY 240
  241 AGCAMGEYFR DRGEDALIIY DDLSKQAVAY RQISLLLRRP PGREAFPGDV FYLHSRLLER 300
  301 AARVNAEYVE AFTKGEVKGK TGSLTALPII ETQAGDVSAF VPTNVISITD GQIFLETNLF 360
  361 NAGIRPAVNP GISVSRVGGA AQTKIMKKLS GGIRTALAQY RELAAFSQFA SDLDDATRKQ 420
  421 LDHGQKVTEL LKQKQYAPMS VAQQSLVLFA AERGYLADVE LSKIGSFEAA LLAYVDRDHA 480
  481 PLMQEINQTG GYNDEIEGKL KGILDSFKAT QSW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qe7A
Description:	No description for 2qe7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits