YRC Public Data Repository - Protein Structure Prediction

Protein:	ATOE_ECOLI
Organism:	Escherichia coli
Length:	440 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATOE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|73856222, gi\|... - gi\|74312745\|ref\|YP_311164.1\| short chain fatty acid transporter [Shigella sonnei Ss046], gi\|73856222...	202.0	[0..1]	[440..1]
gi\|188495823, gi... - gi\|75514410\|ref\|ZP_00736688.1\| COG2031: Short chain fatty acids transporter [Escherichia coli 53638]...	202.0	[0..1]	[440..1]
gi\|227887281, gi... - gi\|227887281\|ref\|ZP_04005086.1\| short-chain fatty acids transporter [Escherichia coli 83972], gi\|227... gi\|226901064, gi... - gi\|237704698\|ref\|ZP_04535179.1\| short-chain fatty acids transporter [Escherichia sp. 3_2_53FAA], gi\|... gi\|91211517, gi\|... - gi\|91211517\|ref\|YP_541503.1\| short-chain fatty acids transporter [Escherichia coli UTI89], gi\|910730... gi\|115513541, gi... - gi\|117624417\|ref\|YP_853330.1\| short chain fatty acid transporter [Escherichia coli APEC O1], gi\|1155... gi\|26248612, gi\|... - gi\|26248612\|ref\|NP_754652.1\| Short-chain fatty acids transporter [Escherichia coli CFT073], gi\|26109... gi\|218559141, gi... - gi\|218559141\|ref\|YP_002392054.1\| short chain fatty acid transporter [Escherichia coli S88], gi\|21836... gi\|218690387, gi... - gi\|218690387\|ref\|YP_002398599.1\| short chain fatty acid transporter [Escherichia coli ED1a], gi\|2184...	202.0	[0..1]	[440..1]
gi\|92115054, gi\|... - gi\|92115054\|ref\|YP_574982.1\| short chain fatty acid transporter [Chromohalobacter salexigens DSM 304...	198.0	[0..1]	[440..1]
gi\|126175282, gi... - gi\|68542416\|ref\|ZP_00582147.1\| Short chain fatty acid transporter [Shewanella baltica OS155], gi\|685...	197.0	[0..1]	[440..1]
gi\|33566896 - gi\|33566896\|emb\|CAE39112.1\| putative short-chain fatty acids transporter [Bordetella parapertussis] gi\|33598338 - gi\|33598338\|ref\|NP_885981.1\| putative short-chain fatty acids transporter [Bordetella parapertussis ...	197.0	[0..2]	[440..46]
gi\|68057567, gi\|... - gi\|68249368\|ref\|YP_248480.1\| short-chain fatty acids transporter [Haemophilus influenzae 86-028NP], ... gi\|145267983, gi... - gi\|145634817\|ref\|ZP_01790525.1\| short-chain fatty acids transporter [Haemophilus influenzae PittAA],...	196.0	[0..1]	[440..1]
ATOE_HAEIN - Short-chain fatty acids transporter OS=Haemophilus influenzae GN=atoE PE=4 SV=1 ATOE_HAEIN - Short-chain fatty acids transporter OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 ...	196.0	[0..1]	[440..1]
gi\|22778235, gi\|... - gi\|23100004\|ref\|NP_693470.1\| short-chain fatty acids transporter [Oceanobacillus iheyensis HTE831], ...	195.0	[0..2]	[440..1]
gi\|145638429, gi... - gi\|145638429\|ref\|ZP_01794039.1\| short chain fatty acids transporter [Haemophilus influenzae PittII],... gi\|46133129 - gi\|46133129\|ref\|ZP_00203088.1\| COG2031: Short chain fatty acids transporter [Haemophilus influenzae ...	195.0	[0..1]	[440..1]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGRISRFMT RFVSRWLPDP LIFAMLLTLL TFVIALWLTP QTPISMVKMW GDGFWNLLAF  60
   61 GMQMALIIVT GHALASSAPV KSLLRTAASA AKTPVQGVML VTFFGSVACV INWGFGLVVG 120
  121 AMFAREVARR VPGSDYPLLI ACAYIGFLTW GGGFSGSMPL LAATPGNPVE HIAGLIPVGD 180
  181 TLFSGFNIFI TVALIVVMPF ITRMMMPKPS DVVSIDPKLL MEEADFQKQL PK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [233-440]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAPPSERLEE SRILTLIIGA LGIAYLAMYF SEHGFNITIN TVNLMFMIAG LLLHKTPMAY  60
   61 MRAISAAARS TAGILVQFPF YAGIQLMMEH SGLGGLITEF FINVANKDTF PVMTFFSSAL 120
  121 INFAVPSGGG HWVIQGPFVI PAAQALGADL GKSVMAIAYG EQWMNMAQPF WALPALAIAG 180
  181 LGVRDIMGYC ITALLFSGVI FVIGLTLF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits