YRC Public Data Repository - Protein Structure Prediction

Protein:	ATOB_ECOLI
Organism:	Escherichia coli
Length:	394 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATOB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|3309206 - gi\|3309206\|gb\|AAC26026.1\| thiolase B [Clostridium acetobutylicum] gi\|14994394, gi\|... - gi\|3309206\|gb\|AAC26026.1\| thiolase B [Clostridium acetobutylicum], gi\|15004782\|ref\|NP_149242.1\| acet...	405.0	[0..1]	[392..1]
gi\|28202508, gi\|... - gi\|28210073\|ref\|NP_781017.1\| acetyl-CoA acetyltransferase [Clostridium tetani E88], gi\|28202508\|gb\|A...	402.0	[0..1]	[392..1]
gi\|77996685, gi\|... - gi\|78044570\|ref\|YP_360188.1\| acetyl-CoA acetyltransferase [Carboxydothermus hydrogenoformans Z-2901]...	402.0	[0..1]	[393..1]
gi\|115251727, gi... - gi\|126700290\|ref\|YP_001089187.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile 630], ...	400.0	[0..1]	[392..1]
gi\|90573693, gi\|... - gi\|90573693\|ref\|ZP_01230204.1\| hypothetical protein CdifQ_02002956 [Clostridium difficile QCD-32g58]... gi\|255518068 - gi\|255518068\|ref\|ZP_05385744.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-97b... gi\|255651184 - gi\|255651184\|ref\|ZP_05398086.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-37x... gi\|254976268 - gi\|254976268\|ref\|ZP_05272740.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-66c... gi\|255093654 - gi\|255093654\|ref\|ZP_05323132.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile CIP 107... gi\|255315403 - gi\|255315403\|ref\|ZP_05356986.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-76w...	400.0	[0..1]	[392..1]
gi\|82725156, gi\|... - gi\|82747075\|ref\|ZP_00909576.1\| Thiolase [Clostridium beijerincki NCIMB 8052], gi\|82725156\|gb\|EAP5990...	399.0	[0..1]	[392..1]
gi\|1073810 - gi\|1073810\|pir\|\|A64092 acetyl-CoA C-acetyltransferase (EC 2.3.1.9) - Haemophilus influenzae (strain ...	397.0	[0..1]	[393..53]
gi\|46133128 - gi\|46133128\|ref\|ZP_00156627.2\| COG0183: Acetyl-CoA acetyltransferase [Haemophilus influenzae R2866] ATOB_HAEIN - Acetyl-CoA acetyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) G... gi\|145638430, gi... - gi\|145638430\|ref\|ZP_01794040.1\| acetyl-CoA:acetoacetyl-CoA transferase subunit alpha [Haemophilus in... ATOB_HAEIN - Acetyl-CoA acetyltransferase OS=Haemophilus influenzae GN=atoB PE=3 SV=1	391.0	[0..1]	[393..1]

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Predicted Domain #1

Region A:
Residues: [1-394]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNCVIVSAV RTAIGSFNGS LASTSAIDLG ATVIKAAIER AKIDSQHVDE VIMGNVLQAG  60
   61 LGQNPARQAL LKSGLAETVC GFTVNKVCGS GLKSVALAAQ AIQAGQAQSI VAGGMENMSL 120
  121 APYLLDAKAR SGYRLGDGQV YDVILRDGLM CATHGYHMGI TAENVAKEYG ITREMQDELA 180
  181 LHSQRKAAAA IESGAFTAEI VPVNVVTRKK TFVFSQDEFP KANSTAEALG ALRPAFDKAG 240
  241 TVTAGNASGI NDGAAALVIM EESAALAAGL TPLARIKSYA SGGVPPALMG MGPVPATQKA 300
  301 LQLAGLQLAD IDLIEANEAF AAQFLAVGKN LGFDSEKVNV NGGAIALGHP IGASGARILV 360
  361 TLLHAMQARD KTLGLATLCI GGGQGIAMVI ERLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.522879
Match:	1wl4A
Description:	Human cytosolic acetoacetyl-CoA thiolase complexed with CoA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits