YRC Public Data Repository - Protein Structure Prediction

Protein:	ATKB_ECOLI
Organism:	Escherichia coli
Length:	682 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATKB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|114776656, gi... - gi\|114776656\|ref\|ZP_01451699.1\| Heavy metal translocating P-type ATPase [Mariprofundus ferrooxydans ...	552.0	[0..3]	[632..222]
gi\|148571608, gi... - gi\|91769253\|ref\|ZP_01271087.1\| ATPase, E1-E2 type:Copper-translocating P-type ATPase:Heavy metal tra...	547.0	[0..1]	[632..249]
gi\|90021580, gi\|... - gi\|90021580\|ref\|YP_527407.1\| copper-translocating P-type ATPase [Saccharophagus degradans 2-40], gi\|...	545.0	[0..3]	[632..199]
gi\|20808818 - gi\|20808818\|ref\|NP_623989.1\| Cation transport ATPase [Thermoanaerobacter tengcongensis MB4] gi\|20517469, gi\|... - gi\|20808818\|ref\|NP_623989.1\| cation transport ATPase [Thermoanaerobacter tengcongensis MB4], gi\|2051...	544.0	[0..3]	[632..192]
gi\|108759546, gi... - gi\|108759546\|ref\|YP_631612.1\| copper-translocating P-type ATPase [Myxococcus xanthus DK 1622], gi\|10...	544.0	[0..1]	[631..198]
gi\|87306843, gi\|... - gi\|87306843\|ref\|ZP_01088989.1\| copper-transporting ATPase [Blastopirellula marina DSM 3645], gi\|8729...	544.0	[0..3]	[634..208]
gi\|242258479, gi... - gi\|242258479\|ref\|ZP_04803277.1\| copper-translocating P-type ATPase [Thermoanaerobacter sp. X513], gi... gi\|241903577, gi... - gi\|241903577\|ref\|ZP_04788299.1\| copper-translocating P-type ATPase [Thermoanaerobacter brockii subsp... gi\|76588523, gi\|... - gi\|76796112\|ref\|ZP_00778480.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP... gi\|114844533, gi... - gi\|167039429\|ref\|YP_001662414.1\| copper-translocating P-type ATPase [Thermoanaerobacter sp. X514], g...	543.0	[0..3]	[632..192]
gi\|85689814, gi\|... - gi\|85708280\|ref\|ZP_01039346.1\| copper/silver efflux P-type ATPase [Erythrobacter sp. NAP1], gi\|85689...	542.0	[0..3]	[632..153]
gi\|86558328, gi\|... - gi\|86609786\|ref\|YP_478548.1\| copper-translocating P-type ATPase [Synechococcus sp. JA-2-3B'a(2-13)],... gi\|86609786 - gi\|86609786\|ref\|YP_478548.1\| copper-translocating P-type ATPase [Cyanobacteria bacterium Yellowstone...	542.0	[0..4]	[640..151]
gi\|56419437, gi\|... - gi\|56419437\|ref\|YP_146755.1\| heavy metal-transporting ATPase [Geobacillus kaustophilus HTA426], gi\|5...	542.0	[0..3]	[632..195]

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Predicted Domain #1

Region A:
Residues: [1-682]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKQLALFE PTLVVQALKE AVKKLNPQAQ WRNPVMFIVW IGSLLTTCIS IAMASGAMPG  60
   61 NALFSAAISG WLWITVLFAN FAEALAEGRS KAQANSLKGV KKTAFARKLR EPKYGAAADK 120
  121 VPADQLRKGD IVLVEAGDII PCDGEVIEGG ASVDESAITG ESAPVIRESG GDFASVTGGT 180
  181 RILSDWLVIE CSVNPGETFL DRMIAMVEGA QRRKTPNEIA LTILLIALTI VFLLATATLW 240
  241 PFSAWGGNAV SVTVLVALLV CLIPTTIGGL LSAIGVAGMS RMLGANVIAT SGRAVEAAGD 300
  301 VDVLLLDKTG TITLGNRQAS EFIPAQGVDE KTLADAAQLA SLADETPEGR SIVILAKQRF 360
  361 NLRERDVQSL HATFVPFTAQ SRMSGINIDN RMIRKGSVDA IRRHVEANGG HFPTDVDQKV 420
  421 DQVARQGATP LVVVEGSRVL GVIALKDIVK GGIKERFAQL RKMGIKTVMI TGDNRLTAAA 480
  481 IAAEAGVDDF LAEATPEAKL ALIRQYQAEG RLVAMTGDGT NDAPALAQAD VAVAMNSGTQ 540
  541 AAKEAGNMVD LDSNPTKLIE VVHIGKQMLM TRGSLTTFSI ANDVAKYFAI IPAAFAATYP 600
  601 QLNALNIMCL HSPDSAILSA VIFNALIIVF LIPLALKGVS YKPLTASAML RRNLWIYGLG 660
  661 GLLVPFIGIK VIDLLLTVCG LV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.69897
Match:	1mhsA
Description:	Proton ATPase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits